View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_1 (Length: 638)
Name: NF1147_low_1
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 29 - 629
Target Start/End: Original strand, 37212767 - 37213392
Alignment:
| Q |
29 |
aagatgttgttccggtttcaacaggcattttagaggatctcaaagagc--------ccagaagatctcaaagtgcgacggagatcagaaatcattgtgga |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37212767 |
aagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccagaagatctcaaagtgcaacggagatcagaaatcattgtgga |
37212866 |
T |
|
| Q |
121 |
atccaaatttaatcgccttctagtagagacggggcaatccctagactctgactgaacatatccacaaggcaacaagttgaagttagtgttaaatttaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212867 |
atccaaatttaatcgccttctagtagagacagggcaatccctagactctgactgaacatatccacaaggcaacaagttgaagttagtgttaaatttaaaa |
37212966 |
T |
|
| Q |
221 |
taacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcctaagcatatacattgatgaagaggttttccattgctata |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37212967 |
taacaagacagataatattttttagagaaaccgaggaaacatgtcattgtacattaagtcctaagcatatacattgatgaagaggttttccattgttata |
37213066 |
T |
|
| Q |
321 |
aacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacacttacttcctactgggagtaaaaatgagaagatcactttt |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37213067 |
aacaaccaaaaatgttctattcaaggctaaactaaatattatagaaaatttcctttaacacttacttcctactgtgagtaaaaatgagaagatcactttt |
37213166 |
T |
|
| Q |
421 |
catgtgtggtgaacnnnnnnntattacttttttagttattaatattggtcaattaaaattctatggtccatcaggaaatgaaaaatgacttccacttgaa |
520 |
Q |
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| T |
37213167 |
catgtgtggtgaacaaaaagatgttacttttttagttattaatattggtcaattaaaattctatggtccatcaggaaatgaaaaatgacttccacttgaa |
37213266 |
T |
|
| Q |
521 |
gtaatatttttaataaaaatgtca-----------------acttttctataaggcaaaatcatcaccaaattcacagaaataacacataacacttcaag |
603 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213267 |
gtaatatttttaataaaaatgtcaacttttaaataatttatacttttctataaggcaaaatcatcaccaaattcacagaaataacacataacacttcaag |
37213366 |
T |
|
| Q |
604 |
gtttaacaaatttcatactcctatgc |
629 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37213367 |
gtttaacaaatttcatactcctatgc |
37213392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 37218116 - 37218299
Alignment:
| Q |
29 |
aagatgttgttccggtttcaacaggcattttagaggatctcaaagagc--------ccagaagatctcaaagtgcgacggagatcagaaatcattgtgga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218116 |
aagatgttgttccggtttcaacaggcattttagaggatctcaaagagcatcggcgaccagaagatctcaaagtgcgacggagatcagaaatcattgtgga |
37218215 |
T |
|
| Q |
121 |
atccaaatttaatcgccttctagtagagacggggcaatccctagactctgactgaacatat--ccacaaggcaacaagttgaag |
202 |
Q |
| |
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| ||||||| | |||||| || ||| ||||||||||| ||||| ||||||||||| ||||||||||||| |||||| |
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| T |
37218216 |
ctttggatttaatttctttctaggagtgacacggcaatccctatactctaactgaacatatacacacaaggcaacaaattgaag |
37218299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 37196070 - 37196127
Alignment:
| Q |
284 |
agcatatacattgatgaagaggttttccattgctataaacaaccaaaaatgttctatt |
341 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||||||||| |||| |||| |
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|
| T |
37196070 |
agcatatgcattgatgaagaggttttgctttgctataaacaaccaaaagtgttttatt |
37196127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 37203774 - 37203829
Alignment:
| Q |
281 |
ctaagcatatacattgatgaagaggttttccattgctataaacaaccaaaaatgtt |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||| | ||| ||||||||||||||| |||| |
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|
| T |
37203774 |
ctaagcatatacattgataaagaggttttgctttgttataaacaaccaaaagtgtt |
37203829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 37203611 - 37203664
Alignment:
| Q |
145 |
agagacggggcaatccctagactctgactgaacatatccacaaggcaacaagtt |
198 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||| |||||||||| ||||| |
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| T |
37203611 |
agagacagggcaatcccaagactcagactgaacatatacacaaggcaagaagtt |
37203664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 37184657 - 37184695
Alignment:
| Q |
163 |
agactctgactgaacatatccacaaggcaacaagttgaa |
201 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
37184657 |
agactgtgactgaacatatgcacaaggcaacaagttgaa |
37184695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 7528662 - 7528755
Alignment:
| Q |
183 |
cacaaggcaacaagttgaagttagtgttaaatttaaaataacaa---gacagataatattttttagagaaaccgaggaaacatgtcattgtacat |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||| |||||| | | | |||||||||||| ||||||||||||||||||||| |
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| T |
7528662 |
cacaaggcaacaagttgaagttaggattaaatctaaaacaacaacaagacaga-attttattttagagaaactcaggaaacatgtcattgtacat |
7528755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 413145 - 413109
Alignment:
| Q |
238 |
ttttttagagaaaccgaggaaacatgtcattgtacat |
274 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||| |
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| T |
413145 |
ttttttagagaaacctaagaaacatgtcattgtacat |
413109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 7528527 - 7528571
Alignment:
| Q |
29 |
aagatgttgttccggtttcaacaggcattttagaggatctcaaag |
73 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||| |||||||||| |
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| T |
7528527 |
aagatgttgttccagttttaacaggcgttttagacgatctcaaag |
7528571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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