View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_10 (Length: 425)
Name: NF1147_low_10
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 35848342 - 35847933
Alignment:
| Q |
7 |
cctgaatcattggctcgttcctgatctctgtacaccttcaaactctccaacactggactcattcccgcgctaacaagcttcttcctggaaactagaatga |
106 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35848342 |
cctgaatcattggctcgttcctgatctctgcacaccctcaaactctccaacactggactcattcccgcgctaacaagcttcttcctggaaactagaatga |
35848243 |
T |
|
| Q |
107 |
acagattgaagaataacaaaatgtacattaaaacaaagatactttagtaactgttgaagaccatgatcctaattcgatcgatgactgcttttgaattcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35848242 |
acagattgaagaataacaaaatgtacattaaaacaaagatcctttagtaactgttgaagaccatgatcctaattcgatcgatgactgcttctgaattcaa |
35848143 |
T |
|
| Q |
207 |
gcatctaaacataaggtnnnnnnntgcatccaactatcttacagatatctcatttcttgcaattcattttaagctaatagtgcaaatcagagacaaaatt |
306 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35848142 |
gcatctaaacataaggtaaaaaaatgcatccagctatcttacagatatctcatttcttgcaattcattttaagctaatagtgcaaatcagagacaaaatg |
35848043 |
T |
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| Q |
307 |
tactcaatgaagaaagctccatatttagctcataaacttggtcattattaagttttatgagcattttaagttaggattattgactaactaaatttagtac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35848042 |
tactcaatgaagaaagctccatatttagctcataaacttggtcattattaagttttctgagcattttaagttaggattattgactaactaaatttagtac |
35847943 |
T |
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| Q |
407 |
tcagaataat |
416 |
Q |
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||||| |||| |
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| T |
35847942 |
tcagagtaat |
35847933 |
T |
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