View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_11 (Length: 420)
Name: NF1147_low_11
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 45321712 - 45322123
Alignment:
| Q |
9 |
gaagaatattaatatactataaaaccgccaaaaagattctaaataagtttccattcaatatttctgggattatcttagggaaaaaagggtttgcaaaact |
108 |
Q |
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| T |
45321712 |
gaagaatattaatatactataaaaccgccaaaaagattctaaataagtttccattcaatatttctgggattatcttagggaaaaaagggtttgcaaaact |
45321811 |
T |
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| Q |
109 |
ggcaatgctccataaatggaagcttcatcctataagaaacaacactcaagctgcctcatcttagaactacatcttgcaaattcatcatcaagagccttta |
208 |
Q |
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| T |
45321812 |
ggcaatgctccataaatggaagcttcatcctataagaaacaacactcaagctgcctcatcttagaactacatcttgcaaattcatcatcaagagccttta |
45321911 |
T |
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| Q |
209 |
nnnnnnnnaaacagcaaaccttattaaggcttagtccgtgcaagaagcacaacaaactagctggcaaaaataaatacaaccgggcgccatatataggcgg |
308 |
Q |
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| T |
45321912 |
ttttttttaaacagcaaaccttattaaggcttagtccgtgcaagaagcacaacaaactagctggcaaaaataaatacaaccgggcgccgtatataggcgg |
45322011 |
T |
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| Q |
309 |
aactccgcaataaaaatcctgtaggtgacaaaagcggctgctagacactaaaggaaccaatctgaactgcttaaaaggcagcaacaaaacacctaaccat |
408 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45322012 |
aactccgcaataaaaatcccgtaggtgacaaaagcggctgctagacactaaaggaaccaatctgaactgcttaaaaggcagcaacaaaacacctaaccat |
45322111 |
T |
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| Q |
409 |
caccatacccca |
420 |
Q |
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| T |
45322112 |
cactgtacccca |
45322123 |
T |
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