View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_13 (Length: 369)
Name: NF1147_low_13
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 32271928 - 32272257
Alignment:
| Q |
13 |
aatattcatgaatcatatctatagaaacttgaagaaatcactaaatagtagttccaaaatgacacaacaaataattgtaagaaagtgttatgatattgtt |
112 |
Q |
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| T |
32271928 |
aatattcatgaatcatatctatagaaacttgaagaaatcactaaatagtagttccaaaatgacacaacaaataattgtaagaaagtgttatgatattgtt |
32272027 |
T |
|
| Q |
113 |
cgaattagtagaaaaagtgatttgatttgatatatatagtttcctttgtcagctgattctaaggctaattcgtaaacatttgagattggttccttcaacc |
212 |
Q |
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| T |
32272028 |
cgaattagtagaaaaagtgatttgatttgatatatatagtttccttagtcagctgattctaaggctaattcgtaaacatttgagagtggttccttcaacc |
32272127 |
T |
|
| Q |
213 |
ctgtacataactattgaacaaatca-ttcagcatttagattcaagtattttaaattcaagttcaatcaagcaatatttttcaatagtttacacagatagg |
311 |
Q |
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| T |
32272128 |
ctgtacataactattgaacaaatcatttcagcatttagattcaagtattttaaattcaagttcaatcaagcaatatttttcaatagtttacacagatagg |
32272227 |
T |
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| Q |
312 |
attcttactagatgaatttggcagtacaat |
341 |
Q |
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| T |
32272228 |
attcttactagatgaatttggcagtacaat |
32272257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 32267975 - 32268055
Alignment:
| Q |
260 |
tttaaattcaagttcaatcaagcaatatttttcaatagtttacacagataggattcttactagatgaatttggcagtacaa |
340 |
Q |
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| T |
32267975 |
tttaaattcaagttcaatcaagcaacatttttcaaaaaattacacggatgggattcgtactacatgaatttggcagtacaa |
32268055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 32267867 - 32267916
Alignment:
| Q |
81 |
aaataattgtaagaaagtgttatgatattgttcgaattagtagaaaaagt |
130 |
Q |
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| T |
32267867 |
aaataattgtaagaaagtgttatgatattgttcgaattagtagagaaagt |
32267916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 48169952 - 48170170
Alignment:
| Q |
13 |
aatattcatgaatcatatctatagaaacttgaagaaatcactaaatagtagttccaaaatgacacaacaaataattgtaagaaagtgttatgatattgtt |
112 |
Q |
| |
|
|||||||||||||||||| |||| || || |||| ||||| | || |||||| ||||| |||| | |||||||||||||||| |||||| |||||||| |
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| T |
48169952 |
aatattcatgaatcatatttataaaacctagaaggaatcattggatggtagtttcaaaaagacatgataaataattgtaagaaactgttataatattgtt |
48170051 |
T |
|
| Q |
113 |
cgaattagtagaaaaagtgatttgatttgatatatatagtttcctttgtcagctgattctaaggctaattcgtaaacatttgagattggttccttcaacc |
212 |
Q |
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| |||||||||| |||||||||||||||| |||| |||||| ||||||||||||| ||||| | |||||||||| ||||| |||||||| || |
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| T |
48170052 |
caaattagtagagaaagtgatttgatttg------atagcttcctt----agctgattctaagactaatccctaaacatttgggattgattccttcagcc |
48170141 |
T |
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| Q |
213 |
ctgtacataactattgaacaaatcattca |
241 |
Q |
| |
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|||||||| |||||| |||||||||||| |
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| T |
48170142 |
ttgtacatagctattgtacaaatcattca |
48170170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 48170210 - 48170284
Alignment:
| Q |
265 |
attcaagttcaatcaagcaatatttttcaatagtttacacagataggattcttactagatgaatttggcagtaca |
339 |
Q |
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||||||| ||||||||||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||||| |
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| T |
48170210 |
attcaagagcaatcaagcaatatttttcaaaagtttaaccagataggatacttaccggatgaatgtggcagtaca |
48170284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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