View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1147_low_17 (Length: 324)
Name: NF1147_low_17
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_17 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 48654078 - 48654393
Alignment:
| Q |
7 |
tccaagaatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacat |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654078 |
tccaagaatatatcaccacatatatgctaaaaataacaatacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacat |
48654177 |
T |
|
| Q |
107 |
ttattaatttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatattttttatctct |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48654178 |
ttattaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatatttttcctctct |
48654277 |
T |
|
| Q |
207 |
ttggtttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654278 |
ttggtttttcaaaacaaattctaacatttatttcctacat--cacaaaaacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatat |
48654375 |
T |
|
| Q |
307 |
atattttagttgtttttc |
324 |
Q |
| |
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|||||||||||||||||| |
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| T |
48654376 |
atattttagttgtttttc |
48654393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 41874471 - 41874439
Alignment:
| Q |
292 |
ttaccacctaaatatatattttagttgtttttc |
324 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
41874471 |
ttaccacttaaatatatattttagttgtttttc |
41874439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 28267398 - 28267709
Alignment:
| Q |
13 |
aatatatcgccacatatat-gctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttatt |
111 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
28267398 |
aatatatagccacatatattgctaaaaataacactacaagcatttttctacaggaaataatatagtcacatatatactataatagatttaaacatttatt |
28267497 |
T |
|
| Q |
112 |
aatttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatattttttatctctttggt |
211 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| | |||||||| |
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| T |
28267498 |
aatttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttacaatactcacattatcatatttttcctttctttggt |
28267597 |
T |
|
| Q |
212 |
ttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatatt |
311 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28267598 |
ttttcaaaaaaaaatctaacatttctttccta-acatcacaaaaacaaataaagcataaacttttgcaaactgttaaatattaccacctaaatatatatt |
28267696 |
T |
|
| Q |
312 |
ttagttgtttttc |
324 |
Q |
| |
|
||||||||||||| |
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|
| T |
28267697 |
ttagttgtttttc |
28267709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 12774658 - 12774971
Alignment:
| Q |
13 |
aatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttatta |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
12774658 |
aatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactatgataaatttaagcatttatta |
12774757 |
T |
|
| Q |
113 |
atttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcac-atcatcatattttttatctctttggt |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||| | |||||||| |
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| T |
12774758 |
atttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttataatactcacaattatcatatttttcctttctttggt |
12774857 |
T |
|
| Q |
212 |
ttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaa----gcataaacttttgtaaactgttaaatattaccacctaaatata |
307 |
Q |
| |
|
|||||||| ||| |||||||||| ||| ||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12774858 |
ttttcaaa--aaaatctaacatttcttttcta-acatcacaaaaacaaataaagcatgcataattttttgtaaactgttaaatattaccacctaaatata |
12774954 |
T |
|
| Q |
308 |
tattttagttgtttttc |
324 |
Q |
| |
|
||||||||||||||||| |
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| T |
12774955 |
tattttagttgtttttc |
12774971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 56 - 324
Target Start/End: Original strand, 18473834 - 18474097
Alignment:
| Q |
56 |
tttctccggtaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagaaaccatataatcattatttc |
155 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
18473834 |
tttctccgggaaataata--gtcacatatatactataataaaattaaacattt--taatttatccaggaagaatttcagcaaccatataatcattatttc |
18473929 |
T |
|
| Q |
156 |
taagatttataccctttttctaatactcacatcatcatattttttatctctttggtttttc-aaaacaaattctaacatttatttcctacatnnnnnnnn |
254 |
Q |
| |
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||||||||||| ||||||| |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
18473930 |
taagatttatatcctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacat--cacaaa |
18474027 |
T |
|
| Q |
255 |
nncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
18474028 |
aacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttaattgtttttc |
18474097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 33007968 - 33008019
Alignment:
| Q |
36 |
aaaataacactacaagcatttttctccggtaaataatatagtcacatatatac |
88 |
Q |
| |
|
|||||||||| ||||| |||||||||| | |||||||||||| |||||||||| |
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|
| T |
33007968 |
aaaataacaccacaagtatttttctccaggaaataatatagt-acatatatac |
33008019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 13773664 - 13773815
Alignment:
| Q |
7 |
tccaagaatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacat |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |
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| T |
13773664 |
tccaagaatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactataataaaattaaa-at |
13773762 |
T |
|
| Q |
107 |
ttattaatttatccaggaagaatttcagaaaccatataatcattatttctaag |
159 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13773763 |
ttattaatttattcaggaagaatttcagcaaccatataatcattatttctaag |
13773815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 155 - 324
Target Start/End: Original strand, 13777096 - 13777264
Alignment:
| Q |
155 |
ctaagatttataccctttttctaatactcacatcatcatattttttatctctttggtttttc-aaaacaaattctaacatttatttcctacatnnnnnnn |
253 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
13777096 |
ctaagatttataccctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacat--cacaa |
13777193 |
T |
|
| Q |
254 |
nnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
13777194 |
aaacaaataaagcataaacttttgtaaactgttaaatattaccaacgaaatatatattttagttgtttttc |
13777264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 42861198 - 42861091
Alignment:
| Q |
49 |
aagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagaaaccatataatca |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42861198 |
aagcatttttctccgggaaataatatagtcacatatatactataatataattaaacatttattaatttatccaggaagaatttcagcaaccatataatca |
42861099 |
T |
|
| Q |
149 |
ttatttct |
156 |
Q |
| |
|
|||||||| |
|
|
| T |
42861098 |
ttatttct |
42861091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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