View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1147_low_18 (Length: 319)
Name: NF1147_low_18
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_18 |
 | |
|
| [»] scaffold0413 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 10289693 - 10289416
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
10289693 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcgcaacttataattcattttc |
10289594 |
T |
|
| Q |
129 |
gtcaatattttcctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289593 |
gtcaatattttcctggaaccccatatagctatcaacacatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
10289494 |
T |
|
| Q |
229 |
gcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
10289493 |
gcgaggaatgatgtgtatcgagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggcttttt |
10289416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 48654741 - 48654464
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48654741 |
ttttccacctattgtaattttccacaaacaccacatatatgtcgacatctatatccaactcatcgacttttatcttggtcacaacttataattcattttc |
48654642 |
T |
|
| Q |
129 |
gtcaatattttcctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
228 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48654641 |
gtcaatattttccttgaatttcatatagctatcaacacatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
48654542 |
T |
|
| Q |
229 |
gcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
48654541 |
gtgaggaatgatgtgtatcgagtttgaggtggtttagagttcggctaggaacaaaagctttcgaggtaagggtttttt |
48654464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 12196860 - 12196802
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
12196860 |
gagtttgaggtggtttagagttcggctaggaagaaaaacttacaaggtaagggcttttt |
12196802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 49170570 - 49170512
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||| |||||||||||| ||||| |
|
|
| T |
49170570 |
gagtttgaggtggtttagagttcgactagaaagaaaagctctcgaggtaagggtttttt |
49170512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 32735806 - 32735528
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
32735806 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaacccatcgacttatatcttggtcacaacttataattcattttc |
32735707 |
T |
|
| Q |
129 |
gtcaatatttt-cctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgg |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32735706 |
ttcaatatttttcctggaaccccatatagctatcaacacatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgg |
32735607 |
T |
|
| Q |
228 |
agcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32735606 |
agcgaggaatgatgtgtatcgagtttgaggtggtttagagttcggctaggaagaaaagctctcgaggtaagggcttttt |
32735528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 41340936 - 41340865
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttttccatatgtccat |
319 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||| || ||||||||||||||| ||||| |||||| |
|
|
| T |
41340936 |
gagtttgaggttgtttagagttcgcctaggaagaaaagctctctaggtaagggctttttcccatacgtccat |
41340865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 22403703 - 22403757
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggct |
302 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
22403703 |
gagtttaaggtggtttagagttcggctaggaagaaaagatctcgaggtaagggct |
22403757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 7337597 - 7337319
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
7337597 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaacccatcgacttatatcttggtcacaacttataattcattttc |
7337498 |
T |
|
| Q |
129 |
gtcaatatttt-cctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgg |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7337497 |
ttcaatatttttcctggaaccccatatagctatcaacacatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgg |
7337398 |
T |
|
| Q |
228 |
agcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
7337397 |
agcgaggaatgatgtgtatcgagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggcttttt |
7337319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 11968173 - 11968102
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttttccatatgtccat |
319 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| | |||||||||||| ||||| ||||| |||||| |
|
|
| T |
11968173 |
gagtttgaggtggtttagagtttggctaggaagaaaagttctcgaggtaagggttttttcccatacgtccat |
11968102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 16975211 - 16975266
Alignment:
| Q |
250 |
gtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggctttt |
305 |
Q |
| |
|
|||||| || |||||| ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
16975211 |
gtttgaggtagtttagtgtttggctaggaagaaaagcttacgaggtaagggctttt |
16975266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 13777612 - 13777335
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13777612 |
ttttccacctatagtaattttccacaaacaccgcatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttataattcattttc |
13777513 |
T |
|
| Q |
129 |
gtcaatattttcctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13777512 |
gtcaatattttcctggaaccccatatagctatcaacacttttgagaatcatgttttcttaccattgtcatggccaattggagtcgaggagagttagtgga |
13777413 |
T |
|
| Q |
229 |
gcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
13777412 |
gcgaggaatgatgtgtatcgagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaaggacttttt |
13777335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 21265103 - 21264826
Alignment:
| Q |
30 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtcacaacttata-ttcattttc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
21265103 |
ttttccacctattgtaattttccacaaacaccacatatatgccgacatctatatccaactcatcgacttttatcttggtctcaacttataattcattttc |
21265004 |
T |
|
| Q |
129 |
gtcaatattttcctggaaccccatatagctatcaacaaatttgagaatcatgttttcttaccgttgtcttggccaattggagtcgaggagagttagtgga |
228 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21265003 |
gtcaatattttccttgaatttcatatagctatcaacacatttgagaatcatgttttcttatcgttgtcttggccaattggagtcgaggagagttagtgga |
21264904 |
T |
|
| Q |
229 |
gcgaggaatgatgtgtatcgagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
21264903 |
gcgaggaatgatgtgtatcgagtttgaggtggtttagagtttggctaggaaggaaagcttacgaggtaagggcttttt |
21264826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 8421530 - 8421588
Alignment:
| Q |
248 |
gagtttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||||||||| || ||||||||||||||| |
|
|
| T |
8421530 |
gagtttgaggtggtttagagttcgactagaaagaaaagctctcaaggtaagggcttttt |
8421588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 43408025 - 43407992
Alignment:
| Q |
273 |
ctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
43408025 |
ctaggaagaaaagctctcgaggtaagggcttttt |
43407992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0413 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0413
Description:
Target: scaffold0413; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 8806 - 8854
Alignment:
| Q |
258 |
tggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8806 |
tggtttagagtttggctaggaagaaaagctctcgaggtaagggcttttt |
8854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 35839060 - 35839115
Alignment:
| Q |
251 |
tttgacgtggtttagagttcggctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
35839060 |
tttgaggtggtttagagtttgactaggaagaaaagctctcgagctaagagcttttt |
35839115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 40458887 - 40458920
Alignment:
| Q |
273 |
ctaggaagaaaagctttcgaggtaagggcttttt |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
40458887 |
ctaggaagaaaagctctcgaggtaagggcttttt |
40458920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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