View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_19 (Length: 318)
Name: NF1147_low_19
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 98 - 318
Target Start/End: Complemental strand, 52474290 - 52474069
Alignment:
| Q |
98 |
tgtctcaactacacaacatgatctccttatgtaggcttaaacaaatcaatnnnnnnnnnt-ttacatgatatcttaacccctatttacatgatataatat |
196 |
Q |
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| T |
52474290 |
tgtctcaactacacaacatgatctccttatgtaggcttaaacaaatcaataaaaaaaaaaattacatgatatcttaacccctatttacatgatataatat |
52474191 |
T |
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| Q |
197 |
gataagaattgcctatcctatgcaataaatccaagatcggtacatataactgaaatcttataaaacataaatacaagttaagcagatacagacctgcctc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52474190 |
gataagaattgcctatcctatgcaataaatccaagatcggtccatataactgaaatcttataaaacataaatacaagttaagcagatacagacctgcctc |
52474091 |
T |
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| Q |
297 |
tgtagcgaggccttcattacat |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
52474090 |
tgtagcgaggccttcattacat |
52474069 |
T |
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