View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_2 (Length: 555)
Name: NF1147_low_2
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 81 - 548
Target Start/End: Complemental strand, 23877146 - 23876681
Alignment:
| Q |
81 |
atcttgatcgtggctacatgtattttgaaagcgtagtaaccactacttgcaagtcaacatgaagcacaatcttatggaaaccatacggtcgagccaaatt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23877146 |
atcttgatcgtggctacatgtattttgaaagcgtagtaaccactacttgcaagtcaacatgaagcacaatcttatggaaaccatgcggtcgagccaaatt |
23877047 |
T |
|
| Q |
181 |
aaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattctacccatgcaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23877046 |
aaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattctacccatgcaa |
23876947 |
T |
|
| Q |
281 |
cactcctctgcttccagcaacactccctcctttatatgtgtcatccatgttaaaacggacccaatccaaccactttcaggggcctgccaaaaattttcca |
380 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23876946 |
cactcctctacttccagcaacactccctcctt--tatgtgtcatccatgttaaaacggacccaatccaaccactttcaggggcctgccaaaaattttcca |
23876849 |
T |
|
| Q |
381 |
aaacagtcattgtagtgttctgctcagaagcagttttagcactaaccggataacaattaacacgccaaggattacctagttgacacaaagtatgacgtcc |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23876848 |
aaacagtcattgtagtgttctgctcagaagcagttttagcactaaccacataacaattaacacgccaaggattacctagttgacacaaagtatgacgtcc |
23876749 |
T |
|
| Q |
481 |
aaaaatcagtccactccaaggcttcctcctcacgaaacaccataaacatccataatcaaccgcattaa |
548 |
Q |
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| T |
23876748 |
aaaaatcagtccactccaaggcttcctcctcacgaaacaccataaacatccataatcaaccgcgttaa |
23876681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 95 - 455
Target Start/End: Original strand, 23421922 - 23422284
Alignment:
| Q |
95 |
tacatgtattttgaaagcgtagtaaccactacttgcaagtcaacatgaagcacaatcttatggaaaccatacggtcgagccaaattaaaaccttcaaaaa |
194 |
Q |
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|||||||||||||||| ||||||||||||||| ||| || ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
23421922 |
tacatgtattttgaaatcgtagtaaccactacctgcgagacaacatgaagctcaatcttatggaaaccatgcggtcgagccaaattcaaaccttcaaaaa |
23422021 |
T |
|
| Q |
195 |
ctcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattctacccatgcaacactcctctgcttc |
294 |
Q |
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| T |
23422022 |
ttcccaaaagttccgccacatacgcactacacacccccaatcttttcgaaaagatacagatc-catttgccattcttcccacgtgacactcctctgcatc |
23422120 |
T |
|
| Q |
295 |
cagcaacactccctcctttatatgtgtcatccatgttaaaacggacccaatccaaccactttcaggggcctgcca---aaaattttccaaaacagtcatt |
391 |
Q |
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|||||| ||||||||||||||||||| |||| |||||||| || ||||||| |||||||||||||| || | | ||||||||||||||||| |
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| T |
23422121 |
cagcaagactccctcctttatatgtgccatcagtgttaaaatgg-----atccaactactttcaggggcctaacacttgatactttccaaaacagtcatt |
23422215 |
T |
|
| Q |
392 |
-----gtagtgttctgctcagaagcagttttagcactaaccggataacaattaacacgccaaggattac |
455 |
Q |
| |
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|| ||||| |||||||||||||||||||| ||||| | |||||||||||| |||||||||||| |
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| T |
23422216 |
atatggtggtgttatgctcagaagcagttttagccctaactgcataacaattaacttgccaaggattac |
23422284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 23419858 - 23419971
Alignment:
| Q |
172 |
agccaaattaaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattcta |
271 |
Q |
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||||||||| ||||||||||||||| | ||||||||||||| |||| ||||| | || |||||||| | |||||||||||||| || || ||||| |
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| T |
23419858 |
agccaaattcaaaccttcaaaaactatccaaagttccgccacttacgcgctacttaaccacaatctctccaaaaagacacagatc-catttgctattctc |
23419956 |
T |
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| Q |
272 |
cccatgcaacactcc |
286 |
Q |
| |
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||||||||||||||| |
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| T |
23419957 |
cccatgcaacactcc |
23419971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 23883451 - 23883338
Alignment:
| Q |
172 |
agccaaattaaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattcta |
271 |
Q |
| |
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||||||||| |||||||||||| || | ||||||| |||||||||| ||| | ||| |||||||||| ||||||||| |||| ||| || |||||| |
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| T |
23883451 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctgcttgcccgcaatctcttccaaaagacactgatc-aatttgccattctc |
23883353 |
T |
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| Q |
272 |
cccatgcaacactcc |
286 |
Q |
| |
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||||||||||||||| |
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| T |
23883352 |
cccatgcaacactcc |
23883338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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