View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1147_low_20 (Length: 318)

Name: NF1147_low_20
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1147_low_20
NF1147_low_20
[»] chr7 (14 HSPs)
chr7 (43-309)||(4845532-4845798)
chr7 (30-309)||(4815784-4816063)
chr7 (30-309)||(4783355-4783634)
chr7 (29-309)||(4711592-4711872)
chr7 (43-309)||(4637166-4637432)
chr7 (33-309)||(4696710-4696986)
chr7 (45-309)||(4673014-4673278)
chr7 (29-309)||(4644002-4644270)
chr7 (45-309)||(4864233-4864500)
chr7 (166-309)||(4653928-4654071)
chr7 (45-280)||(4667252-4667484)
chr7 (171-309)||(4631364-4631505)
chr7 (33-97)||(4653819-4653883)
chr7 (29-82)||(4631222-4631275)
[»] chr4 (1 HSPs)
chr4 (46-227)||(18925344-18925525)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 43 - 309
Target Start/End: Complemental strand, 4845798 - 4845532
Alignment:
Q  43 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt 142  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4845798 ttggttgaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaattt 4845699  T
Q  143 gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattgg 242  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| |    
T  4845698 gaaataataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcg 4845599  T
Q  243 tttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||| ||||||| |||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  4845598 tttatgttgttcggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatattctt 4845532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 4816063 - 4815784
Alignment:
Q  30 cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |  ||| ||| || ||||||  ||||||||     
T  4816063 cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcag 4815964  T
Q  130 agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac 228  Q
    | |||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4815963 aaccaggtaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac 4815865  T
Q  229 taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  4815864 taggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctt 4815784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 4783634 - 4783355
Alignment:
Q  30 cctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaa 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |  ||| ||| ||  || ||  |||||||||    
T  4783634 cctgtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaa 4783535  T
Q  130 agccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac 228  Q
    | |||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4783534 aaccaggtaaattgataagataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataac 4783436  T
Q  229 taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  4783435 taggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttggtttgatttggatggaatattctt 4783355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 29 - 309
Target Start/End: Complemental strand, 4711872 - 4711592
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| |||||| ||||||  ||||||||    
T  4711872 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtca 4711773  T
Q  129 aagccaattaatttgaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataac 228  Q
    ||| ||| | |||| |||   || ||| ||||||   |||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||     
T  4711772 aagtcaagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataat 4711673  T
Q  229 taggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
     ||||||  | || ||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  4711672 aaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctt 4711592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 43 - 309
Target Start/End: Original strand, 4637166 - 4637432
Alignment:
Q  43 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaattt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||  ||||||  |||  ||  || ||| |  |||    
T  4637166 ttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggttt 4637265  T
Q  143 gaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattgg 242  Q
     ||||| |||||| ||||||   |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||  |||||    
T  4637266 caaatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattgg 4637365  T
Q  243 tttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||| || |||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||    
T  4637366 tttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctt 4637432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 4696986 - 4696710
Alignment:
Q  33 gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagc 132  Q
    ||||||||||||||||||||||||||   ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| || |||||||| |||     
T  4696986 gtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaagt 4696887  T
Q  133 caattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactag 231  Q
    ||| | || | |||| ||| ||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||    
T  4696886 caagtgatatcaaatgatattttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataag 4696788  T
Q  232 gattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||||  | |||||| ||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  4696787 gatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctt 4696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 4673014 - 4673278
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga 144  Q
    |||||||||||| ||| |||||||||||||||||||||||| ||||||||||| || ||| |||||| ||||||  ||||||| ||| ||| | |||| |    
T  4673014 ggtggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttca 4673113  T
Q  145 aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt 243  Q
    ||| ||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||  |||  ||| ||    
T  4673114 aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgt 4673212  T
Q  244 ttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    |  || || | ||||||||| ||||||||||||||||||| || |||||||| || ||| ||||||    
T  4673213 tcatgatgcttggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctt 4673278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 4644002 - 4644270
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtca 128  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||    | |  |||    
T  4644002 acctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttca 4644101  T
Q  129 aagccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
     |||||  ||| |||| |  ||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4644102 gagccatctaacttgatacgataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa 4644200  T
Q  228 ctaggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    |||  |||           || || |||||||||||||||||||||||||||||||||  || ||||| |||||||| ||||    
T  4644201 ctaacatt-----------tgatg-tgggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctt 4644270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 4864233 - 4864500
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgta-ttcgctgttgtcaaagccaattaatttg 143  Q
    |||||||||||| ||| ||| || ||||||||||||||| |||| || ||||| || ||| ||| || ||| |||| ||||||||||| ||| | ||||     
T  4864233 ggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcg-tgttgtcaaagtcaagtgatttc 4864331  T
Q  144 aaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt 243  Q
    |||||||| ||| ||||||   ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||||  ||||||  |||| |    
T  4864332 aaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgat 4864431  T
Q  244 ttgtgttgttg---ggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    || | || |||   |||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4864432 ttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctt 4864500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 4653928 - 4654071
Alignment:
Q  166 ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt 265  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||  ||||||  | ||||||||||||||||||||||||||    
T  4653928 ggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagt 4654027  T
Q  266 tatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    |||||||||||||| ||| || | || ||| |||||||||||||    
T  4654028 tatgtttagcttcttattcggttggacttggatgcaatattctt 4654071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 4667252 - 4667484
Alignment:
Q  45 ggtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttga 144  Q
    |||||||||||| ||| ||||||| |||||||||||||| |||||| |||||| |  ||| |||| | ||||||  || |||||||| ||| |||| | |    
T  4667252 ggtggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtca 4667351  T
Q  145 aataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt 243  Q
    ||| ||||||| ||||| ||| |||||||||||||||||||||| ||||| |||||||  || |||||||| ||||||||| |   || ||| |||||||    
T  4667352 aatgataatttgggtca-ctgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagcaaa---agcatttaattggt 4667447  T
Q  244 ttgtgttgttgggaatgaaagttatgtttagcttctc 280  Q
    ||||||| |||||||||||||||| || ||| |||||    
T  4667448 ttgtgtttttgggaatgaaagttacgtctagtttctc 4667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 4631364 - 4631505
Alignment:
Q  171 gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttg------ttgggaatgaaag 264  Q
    ||||||||||||||||||||||| |||||||  || |||||||| ||||||||  ||| |   || ||||||||||||||       |||||||||||||    
T  4631364 gtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagctaaacca---tttaattggtttgtgtttgtatttttgggaatgaaag 4631460  T
Q  265 ttatgtttagcttctcatttgggttgatttgaatgcaatattctt 309  Q
    ||||||||||||||||||||||    ||||| |||||||||||||    
T  4631461 ttatgtttagcttctcatttggagcaatttgtatgcaatattctt 4631505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 4653819 - 4653883
Alignment:
Q  33 gtatcttggtttggtggaacttgattttgaccaacgttgactctataaaccatctccaaagcttt 97  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||  |||||| ||||||    
T  4653819 gtatctaggtttggtggaacttgattttcaccaacgttgacactataaactgtctccagagcttt 4653883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 4631222 - 4631275
Alignment:
Q  29 acctgtatcttggtttggtggaacttgattttgaccaacgttgactctataaac 82  Q
    ||||||||| |  ||||||||||||||||||| |||| ||||||||||||||||    
T  4631222 acctgtatcataatttggtggaacttgattttcaccagcgttgactctataaac 4631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 18925525 - 18925344
Alignment:
Q  46 gtggaacttgattttgaccaacgttgactctataaaccatctccaaagctttatcattacgaatttcgtattcgctgttgtcaaagccaattaatttgaa 145  Q
    ||||||||||||| | ||||||| |||||||||||||| |||| ||  |||| ||| | |  |||| |||||   |||| |||| ||||| ||| || ||    
T  18925525 gtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaa 18925426  T
Q  146 ataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa 227  Q
    || || ||||  |||||   |||||||||||||||||||||||||||| ||||| |  || |||||||| ||||||||||||    
T  18925425 atgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa 18925344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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