View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_22 (Length: 283)
Name: NF1147_low_22
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 40826762 - 40826520
Alignment:
| Q |
12 |
atgaagacgacgatgtgagttgtttgtatatgtcaaaggatatcgttggtgctccatgacggatagtgtacctacgtgcaaggacttttacgttcaagtt |
111 |
Q |
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| T |
40826762 |
atgaagacgacgatgggagttgtttgtatatgtcaaaggacatcgttggtgctccatgacaaatagtgtacctacgtgcaagaacttttacgttcaagtt |
40826663 |
T |
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| Q |
112 |
agtgaaaattttagaagagcgagaagtttaattaaaattgagaacaaatcttttatcaagtgttagtgaccttatatagatttataaaaaacttctgttg |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40826662 |
agtgaaaattttagaagagcgagaagtttaatcaaaattgagaacaaatcttttatcaagtgttagtgaccttatatagatttataaaaaacttctgttg |
40826563 |
T |
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| Q |
212 |
cgtaagttctaacataattcacatattatcgtctcattatcac |
254 |
Q |
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|||| |||| ||||||||||||||||||| || |||||||||| |
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| T |
40826562 |
cgtaggttccaacataattcacatattattgtttcattatcac |
40826520 |
T |
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