View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_24 (Length: 273)
Name: NF1147_low_24
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_24 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 58 - 273
Target Start/End: Original strand, 11815962 - 11816176
Alignment:
| Q |
58 |
aaaacactaatataca--agtacttttgtttgtatcttccaaaaatagggttttagattatacaatacaattcaatacaactcacattccatctcgatgg |
155 |
Q |
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| T |
11815962 |
aaaacactaatatacacaagtacttttgtttgtatcttccaaaaatagggttttagattatacaatacaat-----acaactcacattccatctcgatgg |
11816056 |
T |
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| Q |
156 |
attaaatttctccgggttgagataatttgtaggatccatat--gaatagctcttgaccaagttaacactttccatccttttggtattatatagcctgaaa |
253 |
Q |
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| T |
11816057 |
attaaatttctccgggttgggataatttgtaggatccatatatgaatagctcttgaccaagttaacactttccatccttttggtattatatagcctgaaa |
11816156 |
T |
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| Q |
254 |
atatgtatgttacctctttt |
273 |
Q |
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| T |
11816157 |
atatgtagattacctctttt |
11816176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 258
Target Start/End: Original strand, 11826175 - 11826308
Alignment:
| Q |
129 |
aatacaactcacattccatctcgatggattaaatttctccgggttgagataatttgtaggatccatatgaata----gctcttgaccaagttaacacttt |
224 |
Q |
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| T |
11826175 |
aatacaacttacattccatcttgatgggttaaattcatccgagtttggataatatgtaggatccatgtgaatatatagctcttaaccaaggtaacacttt |
11826274 |
T |
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| Q |
225 |
ccatccttttggtattatatagcctgaaaatatg |
258 |
Q |
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| T |
11826275 |
ccatcctttcggtattatataacctaaaaatatg |
11826308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 11800175 - 11800303
Alignment:
| Q |
129 |
aatacaactcacattccatctcgatggattaaatttctccgggttgagataatttgtaggatccatatgaatagctcttgaccaagttaacactttccat |
228 |
Q |
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| T |
11800175 |
aatagaactcacatcccatctcgatggattaaattcatctgggtttgaataatatgtaggttcatgatgaatagctcttgaccatgttagcactttccat |
11800274 |
T |
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| Q |
229 |
ccttttggtattatatagcctgaaaatat |
257 |
Q |
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|| || || || ||||| |||| |||||| |
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| T |
11800275 |
ccattcgggatgatataacctggaaatat |
11800303 |
T |
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