View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_3 (Length: 528)
Name: NF1147_low_3
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 4065739 - 4065303
Alignment:
| Q |
10 |
aacaaaattacccattaactgttcaaccagaaaggtcagttataattatagattttatattccaaaatgggagatacctatttgaggttggcttaaatgt |
109 |
Q |
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| T |
4065739 |
aacaaaattacccattaactgttcaaccagaaaggtcagttataattatagattttatattccaaaatgggagatacctatttgaggttggcttaaatgt |
4065640 |
T |
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| Q |
110 |
aatgcagatacgagtgaaagcaaatttgtgctagcccaaacaagatggaaattcgcaaaaatgacatcgattgaaggggaagcaaatgcattataacttg |
209 |
Q |
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| T |
4065639 |
aatgcagatacgagtgaaagcaaatttgtgctagcccaaacaagatggaaattcgcaaaaatgacaacgattgaaggggaagcaaatgcattataacttg |
4065540 |
T |
|
| Q |
210 |
aagcaatttagttgaccgtcaataagggatgatagcgggtggtatttgaaactgattctcaagttttagtagactcgatttatactcgttcataaggtgt |
309 |
Q |
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| T |
4065539 |
aagcaatttagttgaccgtcaataagggatgatagcgggtggtatttgaaactgattctcaagttttagtagactcgatttatactcgttcataaggtgt |
4065440 |
T |
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| Q |
310 |
ttttcgagtttaactcatcaatcttccaacattattattagtttgtctttatattctaactttgaagtaaagtttgtaatacgcaaatgagtatgattgt |
409 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
4065439 |
ttttcgagtttaactcattaatcttccaacattattattagtttgtctttatattctaactttgaagtaaagtttgtaatacacaaatgagtatggttgt |
4065340 |
T |
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| Q |
410 |
tgaaactcttgcgttgacaggtgtttaatggactaat |
446 |
Q |
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| T |
4065339 |
tgaaactcttgtgttgacaggtgtttaatggactaat |
4065303 |
T |
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