View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_30 (Length: 255)
Name: NF1147_low_30
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 39183730 - 39183883
Alignment:
| Q |
44 |
tttgatatattgtataatgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccagg |
143 |
Q |
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| T |
39183730 |
tttgacatattgtatagtgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacgcagaacagctcctgcaccagaccttccagg |
39183829 |
T |
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| Q |
144 |
atttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagatttt |
197 |
Q |
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| T |
39183830 |
atttccactggatgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 2102306 - 2102172
Alignment:
| Q |
87 |
attcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
186 |
Q |
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| T |
2102306 |
attcacccgactcccatctgcagaacgaagaacagctccagcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
2102207 |
T |
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| Q |
187 |
tgcaagattttgtttatg-ttacttcatagataaa |
220 |
Q |
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| T |
2102206 |
tgcaagattttgtttatgtttacttcatagataaa |
2102172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 2106297 - 2106201
Alignment:
| Q |
95 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
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| T |
2106297 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2106201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 2097810 - 2097714
Alignment:
| Q |
95 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
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| T |
2097810 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2097714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2041794 - 2041741
Alignment:
| Q |
138 |
tccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
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| T |
2041794 |
tccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaa |
2041741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
161 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
220 |
Q |
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| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
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