View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_35 (Length: 240)
Name: NF1147_low_35
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 3564843 - 3564681
Alignment:
| Q |
46 |
gagtaaaatctacgggaaggaaacaaattgctaggaaatgaaaaggatacatagatgtaaatatgtaatgggtcaattcccgaaactgaaatcacaagaa |
145 |
Q |
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| T |
3564843 |
gagtaaaatctacgggaagaaaacaaattgctaaaaaatgaaaaggatacatagatgtaaatatgtaatgggtcaattcccgaaactgaaatcacaagaa |
3564744 |
T |
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| Q |
146 |
aagaaaaggtcgcgcgtgtataagtgtgtaaagaatggaaatttgacagagtattatatacaa |
208 |
Q |
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| T |
3564743 |
aagaaaaggtcttgcgtgtataagtgtgtaaagaatggaaatttgacagaatattatatacaa |
3564681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3568989 - 3569036
Alignment:
| Q |
1 |
acaaaatgtgataaaatggtaaagtgatcattaaaatgagacggagag |
48 |
Q |
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| T |
3568989 |
acaaaatgtgataaaatggtaaagtgatcattaaaatgagatggagag |
3569036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 28678459 - 28678403
Alignment:
| Q |
80 |
gaaatgaaaaggatacatagatgtaaatatgtaatgggtcaattcccgaaactgaaa |
136 |
Q |
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| T |
28678459 |
gaaatgaaaaggatatatggatgtaaatatgtaatggttcaatttcggaaactgaaa |
28678403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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