View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1147_low_4 (Length: 507)

Name: NF1147_low_4
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1147_low_4
NF1147_low_4
[»] chr1 (12 HSPs)
chr1 (29-494)||(4941469-4941935)
chr1 (59-356)||(3167298-3167593)
chr1 (61-346)||(13269197-13269481)
chr1 (136-287)||(46149932-46150083)
chr1 (131-343)||(40777901-40778113)
chr1 (73-356)||(21485827-21486111)
chr1 (136-357)||(8221669-8221887)
chr1 (160-344)||(45885831-45886012)
chr1 (74-287)||(23288602-23288806)
chr1 (131-220)||(34771275-34771364)
chr1 (301-346)||(51879054-51879099)
chr1 (228-281)||(24646944-24646997)
[»] chr6 (6 HSPs)
chr6 (70-345)||(24209142-24209417)
chr6 (54-346)||(3860837-3861128)
chr6 (141-266)||(33105976-33106100)
chr6 (59-348)||(24585081-24585368)
chr6 (150-334)||(2603791-2603974)
chr6 (297-356)||(15494243-15494302)
[»] chr2 (15 HSPs)
chr2 (62-341)||(37605810-37606090)
chr2 (146-330)||(8267340-8267524)
chr2 (74-356)||(36076293-36076577)
chr2 (59-282)||(20506600-20506820)
chr2 (130-343)||(36520880-36521091)
chr2 (141-345)||(11033110-11033314)
chr2 (76-346)||(39303363-39303633)
chr2 (62-282)||(13536885-13537099)
chr2 (142-346)||(20511696-20511899)
chr2 (213-285)||(21136401-21136473)
chr2 (301-356)||(6606255-6606310)
chr2 (59-165)||(42074781-42074887)
chr2 (301-346)||(13511161-13511206)
chr2 (82-117)||(36520688-36520723)
chr2 (69-122)||(11033038-11033091)
[»] chr7 (5 HSPs)
chr7 (71-346)||(7738730-7739003)
chr7 (60-287)||(24504296-24504520)
chr7 (69-285)||(2746631-2746845)
chr7 (131-282)||(35759122-35759276)
chr7 (141-190)||(19127088-19127137)
[»] chr8 (13 HSPs)
chr8 (59-287)||(1214247-1214475)
chr8 (131-346)||(28430010-28430227)
chr8 (58-259)||(17856812-17857010)
chr8 (136-356)||(17844904-17845128)
chr8 (131-281)||(13241122-13241271)
chr8 (131-284)||(5725815-5725970)
chr8 (217-357)||(12722309-12722449)
chr8 (296-346)||(23273822-23273872)
chr8 (136-284)||(25382264-25382405)
chr8 (301-353)||(24580033-24580085)
chr8 (58-198)||(42573125-42573264)
chr8 (297-357)||(12520550-12520610)
chr8 (69-121)||(29423343-29423395)
[»] chr3 (9 HSPs)
chr3 (136-286)||(26104446-26104596)
chr3 (147-356)||(52032821-52033033)
chr3 (131-282)||(26536389-26536540)
chr3 (144-346)||(53461648-53461843)
chr3 (92-254)||(29019883-29020042)
chr3 (253-359)||(29019629-29019735)
chr3 (301-357)||(33440712-33440768)
chr3 (297-355)||(47042663-47042721)
chr3 (297-346)||(21795460-21795509)
[»] chr4 (11 HSPs)
chr4 (141-346)||(27572457-27572663)
chr4 (60-287)||(9363168-9363388)
chr4 (136-357)||(22851215-22851437)
chr4 (135-287)||(36193317-36193469)
chr4 (134-284)||(30563606-30563756)
chr4 (68-223)||(25505296-25505450)
chr4 (217-282)||(25505205-25505270)
chr4 (299-357)||(12885045-12885103)
chr4 (147-259)||(12885613-12885724)
chr4 (301-345)||(19145910-19145954)
chr4 (302-346)||(30563543-30563587)
[»] chr5 (6 HSPs)
chr5 (58-325)||(41732170-41732438)
chr5 (131-232)||(28440818-28440919)
chr5 (134-266)||(37941227-37941359)
chr5 (223-285)||(28440751-28440810)
chr5 (301-346)||(43585682-43585727)
chr5 (299-357)||(19527955-19528013)
[»] scaffold0443 (1 HSPs)
scaffold0443 (59-286)||(7412-7637)
[»] scaffold0069 (1 HSPs)
scaffold0069 (144-198)||(2300-2354)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 29 - 494
Target Start/End: Complemental strand, 4941935 - 4941469
Alignment:
Q  29 gagaggtttaatctcaccgtctacttgtggcagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnn 128  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||          
T  4941935 gagaggttcaatctcaccgtctacttgtggcagggccgtcccaacagattaagaggcctaaagcaaaaattttaatgtggcttttaaaaatatatttttt 4941836  T
Q  129 ncaacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgca 228  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4941835 tcaacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctattca 4941736  T
Q  229 aatatctgtaatttatttgtcatataatataattataaccaaattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtt 327  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |        ||||||||||||||||||||||| ||||||||    
T  4941735 aatatctataatttatttgtcatataatataattatgaccaaattaattttttagaggccttttttttcacccaaaattttgaggcctaaaacccttgtt 4941636  T
Q  328 tgggttgcttggcccttagactggccctgacttgtgaagtctcatttaaagccggagtaaagctcgaataaactaaatttaattgatgacgcgagatgga 427  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||    
T  4941635 tgggttgcttggcccttagaccggtcctgactagtgaagtctcatttaaaaccagagtaaagctcgaacaaactaagtttaattgatgacgcgaggtgga 4941536  T
Q  428 tatatttttcaattatgctattggaacacgccaaatgggcatagaattatggtgaacttcttcctct 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941535 tatatttttcaattatgctattggaacacgccaaatgggcatagaattatggtgaacttcttcctct 4941469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 59 - 356
Target Start/End: Complemental strand, 3167593 - 3167298
Alignment:
Q  59 cagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgt 158  Q
    ||||| || |||||| ||||||||||  |||||||||||| |||||||| | ||||||||||||        |||| |||| |||||||||||||||| |    
T  3167593 cagggtcggcccaactgattaagaggcttaaagcaaaaatattaatgtgccctttaaaaatatattttttt-aacaaaatatttatataaaatcaatttt 3167495  T
Q  159 gtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatat 258  Q
    |||||||| |||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||| | |||||||| |||| ||||||||    
T  3167494 gtggagaccaaaatttgaattcatgactaagagtaattgatgcctttttggtaatcagttaagctatgcaaatatatataatttatctgtcttataatat 3167395  T
Q  259 aattataaccaaattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctg 356  Q
    | |||||||||||||||||||||||||| |        |||||||||  ||||| |||||| |||||| |||||||||||||||||||| | |||||||    
T  3167394 acttataaccaaattaattttttagaggccttttttgtcacccaaaa--ttgagtcctaaaacccttgcttgggttgcttggcccttaggccggccctg 3167298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 61 - 346
Target Start/End: Original strand, 13269197 - 13269481
Alignment:
Q  61 gggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgt 160  Q
    |||||| ||||||||||||| ||| |||||| ||   |||||||||||||||| |||| |||        ||  ||||| ||||||||||||||||||||    
T  13269197 gggccggcccaacagattaaaaggcctaaagaaatttttttaatgtggctttttaaaa-ataatttttttaattgaatatttatataaaatcaattgtgt 13269295  T
Q  161 ggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataa 260  Q
    |||||| |||||||||||||||||| |||| |||| || |||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||     
T  13269296 ggagacaaaaatttgaattcatgacgaagagtaatagaggcatttttggtaatcagttaagatatacaaatatatgtaatttatctgtcatataatatac 13269395  T
Q  261 ttataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||| ||||||||||||||||||||||         |||||||||||||||| | ||||| ||| | || |||| ||||||||||||    
T  13269396 ttacaaccaaattaattttttagaggactttttttcacccaaaattttgagacataaagtcctcgcttaggtttcttggcccttag 13269481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 46150083 - 46149932
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| | ||||||| |  ||||| ||||||||||||| ||||||||| ||     
T  46150083 aatatttatagaaaatcaattttgtggagaccaaaatttgaattcatgaccaaaagtaattgaggtctttttggtaatcagttaagttatgcaaatgtca 46149984  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttagaggc 287  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  46149983 gtaatttatttgttatataatatatttataaccaaattaattttttagaggc 46149932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 131 - 343
Target Start/End: Complemental strand, 40778113 - 40777901
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    |||| |||| ||||||||| |||||| ||| || || ||||||||||||||||| ||||  |||||||  | ||||| |||||||||||| ||||  |||    
T  40778113 aacaaaatatttatataaagtcaattttgtagataccaaaatttgaattcatgatcaagtgtaattgagacttttttggtaatcagttaaactatataaa 40778014  T
Q  231 tatctgtaatttatttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgg 330  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||||        |||| ||||||||| |||||||||| |||| ||||    
T  40778013 tatctataatttatctgtcatataatatacttataaccaaattaaatttttagaggcctttttttcacctaaaattttgtggcctaaagctcttgcttgg 40777914  T
Q  331 gttgcttggccct 343  Q
    |||||||||||||    
T  40777913 gttgcttggccct 40777901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 73 - 356
Target Start/End: Original strand, 21485827 - 21486111
Alignment:
Q  73 cagattaagaggtctaaagcaaaaat-tttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaaaa 171  Q
    |||||||||||| |||||  |||||  ||||||||||| ||||||||||||        ||||||||| |||||||||||||||| | ||||||| ||||    
T  21485827 cagattaagaggcctaaaaaaaaaaaatttaatgtggcctttaaaaatatatattttt-aacagaatatttatataaaatcaattttatggagaccaaaa 21485925  T
Q  172 tttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaa 271  Q
     |||||||||||| ||||   |||| |  ||||||  ||||||||||||| ||||||||| ||| |||||||| | ||| |||||||   ||||||||||    
T  21485926 cttgaattcatgatcaaggcaaattcagacattttaggtaatcagttaagttatgcaaatgtctataatttatctatcacataatatccgtataaccaaa 21486025  T
Q  272 ttaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctg 356  Q
    ||||||||||||||| |        | |||||||||||||||||||||||||||  ||| |||||||| ||||||||| |||||||    
T  21486026 ttaattttttagaggcctttttttccgcccaaaattttgaggcctaaagcccttacttgagttgcttgacccttagaccggccctg 21486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 8221669 - 8221887
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||| ||||| |||||||||| |||  |||| |||||||||||||  |||| ||| |||||||||| ||||| |||||||| |||| | ||||||| |||    
T  8221669 aatatttatacaaaatcaattttgttaagaccaaaatttgaattc--gaccgagagtaattgatgcctttttggtaatcaggtaagttgtgcaaatgtct 8221766  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttg 334  Q
    ||| ||||| |||||||||||||| |||||||||||||||  |||||||||          |||| |||||||||||||||||||| |||| ||||||||    
T  8221767 gtactttatctgtcatataatatacttataaccaaattaa--ttttagaggttttgtttttcacctaaaattttgaggcctaaagcacttgcttgggttg 8221864  T
Q  335 cttggcccttagactggccctga 357  Q
    |||||||||||| | ||||||||    
T  8221865 cttggcccttaggccggccctga 8221887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 344
Target Start/End: Complemental strand, 45886012 - 45885831
Alignment:
Q  160 tggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatata 259  Q
    ||||||| |||||||||||||||   ||| | ||||||| |  ||| |  |||| ||||||||||| ||||||  |||||||||||||||||||||||||    
T  45886012 tggagaccaaaatttgaattcatagtcaaaagtaattgaggtctttctgataattagttaagctatacaaatacttgtaatttatttgtcatataatata 45885913  T
Q  260 attataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggccctt 344  Q
     |||||| ||||||||||||||| || |         |||||||||||||||||||||| |||||  ||| |||||||| |||||    
T  45885912 tttataagcaaattaattttttaaagactttttt---acccaaaattttgaggcctaaaacccttacttgagttgcttgtccctt 45885831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 23288806 - 23288602
Alignment:
Q  74 agattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaaaatt 173  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||        |||||||||        ||||| ||| ||| ||||  ||||||    
T  23288806 agattaagaggtctaaaacaaaaaatttaatgtgacttttaaaaatatattttttt-aacagaata--------aaatcgattttgtagagatcaaaatt 23288716  T
Q  174 tgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaatt 273  Q
    ||||||||||| ||||| |||||||    ||||| ||||||| ||| | |||| | || |||||||||||| | |||||||||||| ||||||  |||||    
T  23288715 tgaattcatgatcaagagtaattgagttctttttagtaatcaattatgttatggagatgtctgtaatttatctatcatataatatatttataattaaatt 23288616  T
Q  274 aattttttagaggc 287  Q
    ||||||||||||||    
T  23288615 aattttttagaggc 23288602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 34771275 - 34771364
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaa 220  Q
    |||| |||| |||||||||| ||||| |||| | |  ||||||||||||||||||||||| |||||| ||  ||||| ||||||||||||    
T  34771275 aacataatatttatataaaaccaattttgtgcataacaaaatttgaattcatgaccaagagtaattggtggctttttggtaatcagttaa 34771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 51879099 - 51879054
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  51879099 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttag 51879054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 24646944 - 24646997
Alignment:
Q  228 aaatatctgtaatttatttgtcatataatataattataaccaaattaatttttt 281  Q
    |||| ||| ||||||||||||||||| ||||| |||||||||||| ||||||||    
T  24646944 aaatgtctataatttatttgtcatattatatatttataaccaaatcaatttttt 24646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 70 - 345
Target Start/End: Original strand, 24209142 - 24209417
Alignment:
Q  70 caacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaa 169  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||| |||||||||||| ||| ||| |||| |||    
T  24209142 caacagattaagaggtctaaagcaaaaattttaatgtggcctttaaaaatatatattttt-aacagaatatttatataaaatctattttgttgagattaa 24209240  T
Q  170 aatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataacca 269  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||| ||||| |||||||||   |||||||||| | | |||||||||| |||||||||    
T  24209241 aatttgaattcatgaccaatagtaattgaagcattttttgtaatcaattaagttatgcaaatgcatgtaatttatctatgatataatatacttataacca 24209340  T
Q  270 aattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggccctta 345  Q
    ||||||||||||||||| |        |  |||||||||||||||||| |||||||| |||||||||||||||||||    
T  24209341 aattaattttttagaggtcttttttttcgtccaaaattttgaggcctatagcccttgcttgggttgcttggccctta 24209417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 54 - 346
Target Start/End: Original strand, 3860837 - 3861128
Alignment:
Q  54 tgtggcagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatca 153  Q
    |||| ||||||||  ||||||||||||||||  |||| |||||||||||||||||  ||||||| ||||       |||||||| | |||||||||||||    
T  3860837 tgtgccagggccggtccaacagattaagaggcttaaaacaaaaattttaatgtggtctttaaaagtatatttttt-caacagaacatttatataaaatca 3860935  T
Q  154 attgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatat 253  Q
    ||| ||||| ||| ||||||| ||||||||| | ||| |||||||| |||||||  ||||||||||| ||||  ||||||||||||||||| ||||||||    
T  3860936 attttgtgg-gaccaaaatttaaattcatgatctagagtaattgatccatttttgataatcagttaatctatataaatatctgtaatttatatgtcatat 3861034  T
Q  254 aatataattataaccaaattaattttttagag-gcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    |||||||||||||| |||||||||||||| ||            | ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  3861035 aatataattataactaaattaattttttatagttttttttttttagccaaaattttgaaacctaaaacccttgtttgggttgcttggcccttag 3861128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 33106100 - 33105976
Alignment:
Q  141 ttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaat 240  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  33106100 ttatataaaatcaattttgtggagaccaaaatttgaattcatgacctagagtaattgaggcatttttggtaatcagttaagctatgcaaatgtctgtaat 33106001  T
Q  241 ttatttgtcatataatataattataa 266  Q
    ||| ||||||||||||| | ||||||    
T  33106000 tta-ttgtcatataatacacttataa 33105976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 59 - 348
Target Start/End: Complemental strand, 24585368 - 24585081
Alignment:
Q  59 cagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgt 158  Q
    ||||| || ||||||| |||||||||| ||||||||||||||||  ||||| |||||||| |||        ||| ||||| ||||||||||| |||| |    
T  24585368 cagggtcggcccaacaaattaagaggtttaaagcaaaaattttatcgtggcctttaaaaaaatattttttt-aacggaatatttatataaaattaatttt 24585270  T
Q  159 gt-ggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataata 257  Q
     | |||||| |||| |||||||||||||||||| || || | ||||||||  |||| ||||| | |||| |||| |  ||||||||| | ||||||||||    
T  24585269 tttggagaccaaaacttgaattcatgaccaagagtagttaaagcatttttgttaattagttatgttatgtaaattt--gtaatttatctctcatataata 24585172  T
Q  258 taattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagac 348  Q
    || ||||||| | |||||||||||||||||        ||||||||||||| ||||||||| ||  || |||| |||||||||||||||||    
T  24585171 tacttataactagattaattttttagaggcatttttttcacccaaaattttaaggcctaaaacctctgcttggattgcttggcccttagac 24585081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 150 - 334
Target Start/End: Original strand, 2603791 - 2603974
Alignment:
Q  150 atcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtc 249  Q
    ||||||| |||||||||  |||||||||||||||| ||| | |||| || |  |||||  |||||| || || ||| ||||| |||||||||||| |||     
T  2603791 atcaattttgtggagaccgaaatttgaattcatgatcaaaagtaatagaggtctttttaataatcaattgagttatacaaatgtctgtaatttatctgtt 2603890  T
Q  250 atataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttg 334  Q
    |||||||||| ||||||||||||||||| ||||||||         |||||||||||||||||| ||||||||||| ||||||||    
T  2603891 atataatatacttataaccaaattaattatttagagg-tcttttttcacccaaaattttgaggcttaaagcccttgcttgggttg 2603974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 15494302 - 15494243
Alignment:
Q  297 acccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctg 356  Q
    ||||||||| ||||||||||||||||| | || ||| ||||||||||||| | |||||||    
T  15494302 acccaaaatcttgaggcctaaagccctcgctttggtggcttggcccttaggccggccctg 15494243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 62 - 341
Target Start/End: Original strand, 37605810 - 37606090
Alignment:
Q  62 ggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtg 161  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||||||||  |||||||||||        ||||||||| |||||||||||||||| ||||    
T  37605810 ggccgacccaacaaattaagaggtctaaagcaaattttttaatgtggcagttaaaaatatattttttttaacagaatatttatataaaatcaattttgtg 37605909  T
Q  162 gagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataat 261  Q
    ||||||||||||||| |||||||| |||| ||||||| |  ||||| |||||||||||||||||||||||   |||||||||| |||||||||| ||| |    
T  37605910 gagactaaaatttgagttcatgactaagagtaattgaagtctttttggtaatcagttaagctatgcaaatgcttgtaatttatctgtcatataacatact 37606009  T
Q  262 tataaccaaattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcc 341  Q
    |||||| |||||||||||||||||| |        |||||||||||||||| |||||  ||||||||||||||||||||||    
T  37606010 tataactaaattaattttttagaggcctttgttttcacccaaaattttgagacctaagacccttgtttgggttgcttggcc 37606090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 146 - 330
Target Start/End: Complemental strand, 8267524 - 8267340
Alignment:
Q  146 taaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatt 245  Q
    ||||||||||| |||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |||||||     
T  8267524 taaaatcaattttgtggagacctaaatttgaattcatgaccaagagtaattgatgcatttttggtaatcagttaagctatgcaaatgtctggaatttatc 8267425  T
Q  246 tgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgg 330  Q
    | |||||||||||| |||||| |||||||||||||||||| |        || |||||||||||||| |||||||| ||| ||||    
T  8267424 tctcatataatatacttataatcaaattaattttttagagacttttttttcatccaaaattttgaggtctaaagccgttgcttgg 8267340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 74 - 356
Target Start/End: Complemental strand, 36076577 - 36076293
Alignment:
Q  74 agattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaaaatt 173  Q
    |||||| |||| ||||||||||||||||| | |||| ||||||| ||||        |||| |||| |||||||||||||||||||||||||  ||||||    
T  36076577 agattaggaggcctaaagcaaaaattttattatggcctttaaaagtatatattttttaacataatatttatataaaatcaattgtgtggagatcaaaatt 36076478  T
Q  174 tgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaatt 273  Q
    |||||||| |||||||| ||| ||| || || ||  |||||||||||| ||||||||| |||||| ||||| | ||||| | |||| |||||||||||||    
T  36076477 tgaattcaagaccaagagtaactgaggccttcttgataatcagttaagttatgcaaatgtctgtagtttatctatcatacactatatttataaccaaatt 36076378  T
Q  274 aattttttagaggc--nnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctg 356  Q
    || |||||||||||          ||| |||||||||| |||||||| |||||| |||||||||||||| ||||||| |||||||    
T  36076377 aaatttttagaggccttttttattcactcaaaattttgtggcctaaaacccttgcttgggttgcttggctcttagaccggccctg 36076293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 20506820 - 20506600
Alignment:
Q  59 cagggccgtcccaacaga-ttaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattg 157  Q
    |||||||| ||||||||| ||||||||  ||||||||||||||||||||| | |||||||||||         ||||||||| ||||||||||||||||     
T  20506820 cagggccgacccaacagaattaagaggcataaagcaaaaattttaatgtgacctttaaaaatattttttt---aacagaatatttatataaaatcaattt 20506724  T
Q  158 tgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataata 257  Q
    ||||||||| |||||||||||||||||| |||| |||| ||  | ||||| ||||| ||||||| ||| ||||| |||||||||||| ||||| ||||||    
T  20506723 tgtggagaccaaaatttgaattcatgac-aagagtaatagagacttttttggtaataagttaagttatacaaatgtctgtaatttatctgtcacataata 20506625  T
Q  258 taattataaccaaattaatttttta 282  Q
    || ||||||||||||||||||||||    
T  20506624 tacttataaccaaattaatttttta 20506600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 343
Target Start/End: Original strand, 36520880 - 36521091
Alignment:
Q  130 caacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaa 229  Q
    ||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||  | ||  ||||  |||| ||||||| |||||||    
T  36520880 caacataatatttatataaaatcaattttgtggagaccaaaatttgaattcatgac-aagagtaataaaggccgttttgataattagttaagttatgcaa 36520978  T
Q  230 atatctgtaatttatttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttg 329  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||         || ||||||||||||||| |||||| |||| |||    
T  36520979 atatctgtaatttatt-gtcatataatataattataacccaattaattttttaggggaattttttccatccaaaattttgaggcttaaagcacttgcttg 36521077  T
Q  330 ggttgcttggccct 343  Q
    ||||||||||||||    
T  36521078 ggttgcttggccct 36521091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 141 - 345
Target Start/End: Original strand, 11033110 - 11033314
Alignment:
Q  141 ttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaat 240  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||| | |||||| | ||||| |||| |||||||||| |||||| |    
T  11033110 ttatataaaatcaattttgtggagaccaaaatttgaattcatgatcaagagtaattgaggtatttttggaaatcaattaaactatgcaaatgtctgtagt 11033209  T
Q  241 ttatttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggc 340  Q
    |||| | |||||||||||| |||||||||||||||||||||| || |        |||  |||||||||||||||||| |||||| |||| ||||||| |    
T  11033210 ttatctatcatataatatacttataaccaaattaattttttaaagacctttttttcacataaaattttgaggcctaaaacccttgcttggattgcttgac 11033309  T
Q  341 cctta 345  Q
    |||||    
T  11033310 cctta 11033314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 76 - 346
Target Start/End: Complemental strand, 39303633 - 39303363
Alignment:
Q  76 attaagaggtctaaagcaaaaattttaatgtggcttttaaaaatat-annnnnnncaacagaatagttatataaaatcaattgtgtggagactaaaattt 174  Q
    |||||| |||||||||||||  |||||||||||||||||||| ||| |        ||||||| | | ||| |||||||||| ||||||||  |||||||    
T  39303633 attaagtggtctaaagcaaattttttaatgtggcttttaaaattattattatttttaacagaacattcataaaaaatcaattttgtggagatcaaaattt 39303534  T
Q  175 gaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaatta 274  Q
    ||||| |||||| ||| |||||||| ||||||| ||||||| ||||  ||||||||| | |||||||||| ||| |||||||||| ||||||||||||||    
T  39303533 gaattgatgacctagagtaattgatacatttttggtaatcaattaatttatgcaaatgtgtgtaatttatctgttatataatatatttataaccaaatta 39303434  T
Q  275 attttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    |||||||||||| |        ||||||||||||||| | ||||||||||  |  ||||||||||||||||||    
T  39303433 attttttagaggccttttttgccacccaaaattttgaagtctaaagccct--tacgggttgcttggcccttag 39303363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 13537099 - 13536885
Alignment:
Q  62 ggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtg 161  Q
    ||||| |||||||||||||||||  |||| |||||| ||||||||||| ||| ||| |||         || |||||| |||||||||| |||||| |||    
T  13537099 ggccgacccaacagattaagaggcttaaatcaaaaaatttaatgtggcctttgaaattattttttt---aatagaatatttatataaaagcaattgcgtg 13537003  T
Q  162 gagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataat 261  Q
    ||||| |||||||||||||||||||| || ||||| |  | |||||    |||||||||||||| ||||| |||||||||||| |||||||||||||| |    
T  13537002 gagaccaaaatttgaattcatgaccatgagtaattaaaacctttttg---atcagttaagctattcaaatgtctgtaatttatctgtcatataatatact 13536906  T
Q  262 tataaccaaattaatttttta 282  Q
    ||| |||||||||||||||||    
T  13536905 tatgaccaaattaatttttta 13536885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 346
Target Start/End: Complemental strand, 20511899 - 20511696
Alignment:
Q  142 tatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatt 241  Q
    |||||| ||| |||| ||||||||||||||||||||||| ||| || || ||||||| |  ||||| |||||||| || | ||||  ||| |||||||||    
T  20511899 tatatataattaattttgtggagactaaaatttgaattcttgatcaggagtaattgaggtctttttggtaatcagatatgttatgtcaatgtctgtaatt 20511800  T
Q  242 tatttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcc 341  Q
    | | ||||| |||||||| ||||||||||||||| |||||||| ||         | ||||||||||||| |||||||||||||||||||||| ||| ||    
T  20511799 tttctgtcagataatatatttataaccaaattaaatttttagatgccttttttt-atccaaaattttgagacctaaagcccttgtttgggttgtttgacc 20511701  T
Q  342 cttag 346  Q
    |||||    
T  20511700 cttag 20511696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 21136401 - 21136473
Alignment:
Q  213 tcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaattaattttttagag 285  Q
    |||||||||| |||||||| ||| |||||||| |||||||||||||  |||||||||||||||||||||||||    
T  21136401 tcagttaagccatgcaaatgtctataatttatctgtcatataatattcttataaccaaattaattttttagag 21136473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 6606310 - 6606255
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctg 356  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||    
T  6606310 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggccctg 6606255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 42074887 - 42074781
Alignment:
Q  59 cagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgt 158  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||| ||   ||||||||||||        || | |||| |||||||||||||||| |    
T  42074887 cagggccgtcccaacaaattaaaaggtctaaagtaaaaattttaatatgatctttaaaaatatatattttttaatacaatatttatataaaatcaatttt 42074788  T
Q  159 gtggaga 165  Q
    |||||||    
T  42074787 gtggaga 42074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 13511161 - 13511206
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||    
T  13511161 aaaattttgaggcctaaagcccttgcttgggtggcttgacccttag 13511206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 36520688 - 36520723
Alignment:
Q  82 aggtctaaagcaaaaattttaatgtggcttttaaaa 117  Q
    ||||||||||||||||||||||||||| ||||||||    
T  36520688 aggtctaaagcaaaaattttaatgtggattttaaaa 36520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 11033038 - 11033091
Alignment:
Q  69 ccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatata 122  Q
    |||||| ||||||| |  ||||||||||||||||||||||  ||||||||||||    
T  11033038 ccaacaaattaagaagcttaaagcaaaaattttaatgtggtctttaaaaatata 11033091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 6e-63; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 71 - 346
Target Start/End: Original strand, 7738730 - 7739003
Alignment:
Q  71 aacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaaa 170  Q
    ||||||||| ||||||||||||||||  ||||||||||  ||||||||| ||        |||| |||| |||||||||||||||| |||||| || |||    
T  7738730 aacagattaggaggtctaaagcaaaatctttaatgtggtctttaaaaat-tattttttt-aacaaaatatttatataaaatcaattttgtggaaaccaaa 7738827  T
Q  171 atttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaa 270  Q
    |||||||||||||||||||| ||||||| |  ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  7738828 atttgaattcatgaccaagagtaattgaggtctttttcgtaatcagttaagctatgcaaatgtctgtaatttatctgtcatataatatatttataaccaa 7738927  T
Q  271 attaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||| |||||||||||||        |||||||||||||||||| ||||||||||| || | |||||||||||||||    
T  7738928 attgattttttagaggcttttttttcacccaaaattttgaggcttaaagcccttgctttgattgcttggcccttag 7739003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 60 - 287
Target Start/End: Original strand, 24504296 - 24504520
Alignment:
Q  60 agggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtg 159  Q
    ||||||| ||||| ||||||||||   |||| |||||| ||||||||||| || ||||||||         |||| |||| |||||||||||||||| ||    
T  24504296 agggccgacccaatagattaagagacataaatcaaaaaatttaatgtggccttcaaaaatatttttttt--aacaaaatatttatataaaatcaattttg 24504393  T
Q  160 tggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatata 259  Q
    ||||||| |||||||||||||||||| ||||||||||||||  ||||| |||||||  |||| |||||||| |||| ||| |||||||||||||||||||    
T  24504394 tggagaccaaaatttgaattcatgac-aagaataattgatgtttttttggtaatcaactaagttatgcaaacatctataacttatttgtcatataatata 24504492  T
Q  260 attataaccaaattaattttttagaggc 287  Q
     |||||||||||||| ||| ||||||||    
T  24504493 cttataaccaaattagtttgttagaggc 24504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 2746631 - 2746845
Alignment:
Q  69 ccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagacta 168  Q
    |||||| |||||||||||||||||||||| |||| ||||||||||||||||||         |||| |||| ||||||||| |||||| ||  ||||  |    
T  2746631 ccaacaaattaagaggtctaaagcaaaaaatttattgtggcttttaaaaatattttcttt--aacaaaatatttatataaattcaattttgctgagaaca 2746728  T
Q  169 aaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatataattataacc 268  Q
    |||||||||||||||| |||||  ||||||  |||||||  |||||| ||||| |||||||||| || | |||||| | |||||||||||| |||||||     
T  2746729 aaatttgaattcatgatcaagagcaattgaaacatttttgataatcaattaagttatgcaaatacctatgatttatctatcatataatatacttataaca 2746828  T
Q  269 aaattaattttttagag 285  Q
    |||||||||||||||||    
T  2746829 aaattaattttttagag 2746845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 282
Target Start/End: Original strand, 35759122 - 35759276
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    ||||||||| ||||||||||||||||  |||||||| ||||||||||||||||   |||| |||||||  | |||||  ||| ||| |||| ||||||||    
T  35759122 aacagaatatttatataaaatcaattccgtggagaccaaaatttgaattcatgctgaagagtaattgagacttttttcataaacagctaagatatgcaaa 35759221  T
Q  231 tat---ctgtaatttatttgtcatataatataattataaccaaattaatttttta 282  Q
    |||   || |||||||| | |||||||||||| ||||||| ||||||||||||||    
T  35759222 tatctactataatttatctatcatataatatacttataactaaattaatttttta 35759276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 19127088 - 19127137
Alignment:
Q  141 ttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaaga 190  Q
    |||||||||||||||| | ||||||| || ||||||||| ||||||||||    
T  19127088 ttatataaaatcaattttatggagaccaacatttgaatttatgaccaaga 19127137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 59 - 287
Target Start/End: Complemental strand, 1214475 - 1214247
Alignment:
Q  59 cagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgt 158  Q
    |||||||| ||||||| ||||||| | |||||||||||| ||||||||||| ||||||| |||         |||| |||| |||||||||||||||| |    
T  1214475 cagggccggcccaacaaattaagatgcctaaagcaaaaaatttaatgtggcctttaaaattattacttttttaacataatatttatataaaatcaatttt 1214376  T
Q  159 gtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatat 258  Q
    |||||||| |||| |||||||||||||||||| |||||||    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1214375 gtggagaccaaaaattgaattcatgaccaagagtaattgagatctttttggtaatcagttaagctatgcaaatgtctgtaatttatttgtcatataatat 1214276  T
Q  259 aattataaccaaattaattttttagaggc 287  Q
    | ||||||   ||||||||||||||||||    
T  1214275 acttataaattaattaattttttagaggc 1214247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 131 - 346
Target Start/End: Original strand, 28430010 - 28430227
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||| ||||||| ||||||| ||||||| || || || |||| |||||||| |||| |||    
T  28430010 aacagaatatttatataaaatcaattttgtggagaccaaaatttaaattcattaccaagagtaattgaggccttcttggtaaccagttaagttatgtaaa 28430109  T
Q  231 tatctgtaatttatttgtcatataatataattataaccaaattaattttttagaggc--nnnnnnnncacccaaaattttgaggcctaaagcccttgttt 328  Q
    | |||  ||||||| | ||||||| |||| |||||||||||||||||||||| ||||          || ||||||||||||||||||||||||||| ||    
T  28430110 tgtcttaaatttatctatcatatattatatttataaccaaattaattttttaaaggcttttttttttcatccaaaattttgaggcctaaagcccttgctt 28430209  T
Q  329 gggttgcttggcccttag 346  Q
    ||||||||||||||||||    
T  28430210 gggttgcttggcccttag 28430227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 17857010 - 17856812
Alignment:
Q  58 gcagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattg 157  Q
    ||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||        ||| |||||| ||||||||||||||||     
T  17857010 gcagggccgacccaacagattaagaggcctaaaacaaaaaatttaatgtggcttgtaaaaatat---tttttcaagagaatatttatataaaatcaatta 17856914  T
Q  158 tgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataata 257  Q
    |||| |||| |||||||||||| |||||||||| ||||| |  |||||||  ||||| |||||||||| ||||| ||||||||||||| || ||||||||    
T  17856913 tgtgaagaccaaaatttgaatttatgaccaagagtaattaagacatttttgataatcggttaagctatacaaatgtctgtaatttattagttatataata 17856814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 136 - 356
Target Start/End: Original strand, 17844904 - 17845128
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||| |||||||||||||||| ||| ||||  ||||||| | ||||||| ||||| ||||||| |  ||||| ||||||||||||||||||||||| |||    
T  17844904 aatatttatataaaatcaattttgtagagatcaaaatttaatttcatgatcaagagtaattgaggtctttttggtaatcagttaagctatgcaaatgtct 17845003  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttagag----gcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttggg 331  Q
      ||||||| ||| |||||||||| |||||||||||||||||||||||||              || |||||||||||||||||| | |||||| |||||    
T  17845004 taaatttatctgttatataatatacttataaccaaattaattttttagagatttttttttttttcatccaaaattttgaggcctataacccttgcttggg 17845103  T
Q  332 ttgcttggcccttagactggccctg 356  Q
    ||||||||||||||||| |||||||    
T  17845104 ttgcttggcccttagaccggccctg 17845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 281
Target Start/End: Original strand, 13241122 - 13241271
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||| ||| ||| | ||| ||||| |  | |||||  |||||||||||||||||||||    
T  13241122 aacagaatatttatataaaatcaattttgtggagaccaaaatttgagttcgtgatctagagtaatt-agacctttttgataatcagttaagctatgcaaa 13241220  T
Q  231 tatctgtaatttatttgtcatataatataattataaccaaattaatttttt 281  Q
    | |||||||||||| | |||||||||||| | ||||||||||||| |||||    
T  13241221 tgtctgtaatttatctatcatataatatactcataaccaaattaaattttt 13241271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 5725815 - 5725970
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtg--gagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgca 228  Q
    |||| |||| |||||||||||||||| |||   ||||| ||||||||| ||| ||||| |||  |||||| ||||||||  ||||||  |||| ||||||    
T  5725815 aacataatatttatataaaatcaattttgtatagagaccaaaatttgatttcgtgacctagagaaattgaggcatttttgataatcaagtaagttatgca 5725914  T
Q  229 aatatctgtaatttatttgtcatataatataattataaccaaattaattttttaga 284  Q
    ||| ||| |||||||| | |||||||||||| |||||| |||||||||||||||||    
T  5725915 aatgtctataatttatctatcatataatatatttataatcaaattaattttttaga 5725970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 12722449 - 12722309
Alignment:
Q  217 ttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggccta 316  Q
    ||||||||||||||| ||| ||||| || | |||||||||||| |||||| ||||||||||||||| || |        || ||||||||||||||||||    
T  12722449 ttaagctatgcaaatgtctataattcatctatcatataatatatttataatcaaattaattttttaaagacctttttttcatccaaaattttgaggccta 12722350  T
Q  317 aagcccttgtttgggttgcttggcccttagactggccctga 357  Q
    ||| | ||| ||| |||  ||||||||||||| ||||||||    
T  12722349 aagtctttgcttgagttatttggcccttagaccggccctga 12722309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 23273822 - 23273872
Alignment:
Q  296 cacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23273822 cacccaaaattttgaggcctaaaacccttgtttgggttgcttggcccttag 23273872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 25382264 - 25382405
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||| | ||||| ||||||| |      | |||||||  ||| ||||| |||| |      
T  25382264 aatatttatataaaatcaattttgtgaagactaaaatttgaattcattatcaagagtaattgagg------tggtaatca-ataaactatgaaaatgtaa 25382356  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttaga 284  Q
    ||||||||||||| || ||||||| |||||||||||||||| |||||||    
T  25382357 gtaatttatttgttatgtaatatacttataaccaaattaatgttttaga 25382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 24580033 - 24580085
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggcc 353  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||| ||||||    
T  24580033 aaaattttgaggactaaagcccttgcttgggtggcttggcccttaggctggcc 24580085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 42573125 - 42573264
Alignment:
Q  58 gcagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattg 157  Q
    ||||||||| ||| | ||||||||||| ||||| ||||||  |||||||||  ||||||||||||        |||| |||| || |||||||||||||     
T  42573125 gcagggccggccctagagattaagaggcctaaaacaaaaaaattaatgtggtctttaaaaatatatttttct-aacaaaatatttgtataaaatcaattt 42573223  T
Q  158 tgtggagactaaaatttgaattcatgaccaagaataattga 198  Q
    | | ||||  ||||||| ||||||||||||||| |||||||    
T  42573224 tatagagatcaaaatttaaattcatgaccaagagtaattga 42573264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 12520550 - 12520610
Alignment:
Q  297 acccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctga 357  Q
    ||||||||| |||||||||||| |||||| |||||| | ||||||||||| | ||||||||    
T  12520550 acccaaaatcttgaggcctaaaacccttgcttgggtggtttggcccttaggccggccctga 12520610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 29423343 - 29423395
Alignment:
Q  69 ccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatat 121  Q
    |||| ||||||||||| ||||| |||||||||||||| ||| |||||||||||    
T  29423343 ccaatagattaagaggcctaaaacaaaaattttaatgcggcctttaaaaatat 29423395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 26104446 - 26104596
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||| || ||| ||||||||||||||  |||    
T  26104446 aatagttatataaaatcaattgtgtggagattaaaatttgaattcatgaccaagagtaattgatgtcttttttatattcaattaagctatgcaaacgtct 26104545  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttagagg 286  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26104546 ctaatttatttgtcatataatataattataactaaattaattttttagagg 26104596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 147 - 356
Target Start/End: Original strand, 52032821 - 52033033
Alignment:
Q  147 aaaatcaattgtgtggagacta---aaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaattta 243  Q
    |||||||||| ||||||||| |   ||||||||||||||||||||||  ||||||  | ||||| ||||| | ||||||||||||||| ||| |||||||    
T  52032821 aaaatcaattttgtggagaccaccaaaatttgaattcatgaccaagagcaattgagacttttttggtaataatttaagctatgcaaatgtctataattta 52032920  T
Q  244 tttgtcatataatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggccct 343  Q
    | |||||||||||||| ||||||| ||||||||| ||| |||||        || |||||||| || |||||||| |||||| |||||||||||||||||    
T  52032921 tatgtcatataatatacttataacaaaattaattctttcgaggcctttttttcatccaaaattgtgtggcctaaaacccttgcttgggttgcttggccct 52033020  T
Q  344 tagactggccctg 356  Q
    ||||| |||||||    
T  52033021 tagaccggccctg 52033033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 282
Target Start/End: Complemental strand, 26536540 - 26536389
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    ||||||||| |||||||||||||||| ||||||||| |||| ||||||| |||||||| | ||||||| | ||||||  |||||||||||||||| | ||    
T  26536540 aacagaatatttatataaaatcaattttgtggagaccaaaacttgaatttatgaccaaaagtaattgaggtatttttgataatcagttaagctatacgaa 26536441  T
Q  231 tatctgtaatttatttgtcatataatataattataaccaaattaatttttta 282  Q
    | ||| || ||||| ||| | |||||||| ||||||||||||||||||||||    
T  26536440 tgtctatagtttatctgtaagataatatacttataaccaaattaatttttta 26536389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 346
Target Start/End: Original strand, 53461648 - 53461843
Alignment:
Q  144 tataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaattta 243  Q
    ||||||||||||| |||||| || |||||||||||| |||||||||||||||||| |             || |||| ||||||||||||||||||||||    
T  53461648 tataaaatcaattttgtggataccaaaatttgaatttatgaccaagaataattgaagtc-----------caattaaactatgcaaatatctgtaattta 53461736  T
Q  244 tttgtcatataatataattataaccaaattaattttttagaggc----nnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttgg 339  Q
    |||||||||||||||| ||||||||||||| |||||||| |  |            ||||||||||||||||||||||| ||||||| | ||||||||||    
T  53461737 tttgtcatataatatatttataaccaaatttattttttaaaaaccttttttttattcacccaaaattttgaggcctaaaacccttgtgtaggttgcttgg 53461836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 29020042 - 29019883
Alignment:
Q  92 caaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaa 191  Q
    |||||||||||||||||| |||||||||||         ||||||||| |||||||||||||||| || ||||||  ||||||||||||||||||||||     
T  29020042 caaaaattttaatgtggcctttaaaaatatctttttt--aacagaatatttatataaaatcaattttgaggagaccgaaatttgaattcatgaccaagag 29019945  T
Q  192 taattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatata 254  Q
    ||||||| |  ||||| ||||||||||| | ||| ||||| ||||||||| || | |||||||    
T  29019944 taattga-ggttttttagtaatcagttatgttatacaaatgtctgtaattcatctatcatata 29019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 29019735 - 29019629
Alignment:
Q  253 taatataattataaccaaattaattttttagaggcnnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggc 352  Q
    ||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||| ||  ||||||||| |||||  | |||    
T  29019735 taatatatttataaccaaattaattttttagaggcacttttttcacccaaaattttgaggcctaaaacccttgcttaagttgcttggtccttaagccggc 29019636  T
Q  353 cctgact 359  Q
    |||||||    
T  29019635 cctgact 29019629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 33440712 - 33440768
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctga 357  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| | ||||||||||    
T  33440712 aaaaatttgaggcctaaagcccttgcttgggtggcttggcccttgggctggccctga 33440768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 47042721 - 47042663
Alignment:
Q  297 acccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccct 355  Q
    ||||||||| |||| |||||||||| |||||||||| ||||||||||||| | ||||||    
T  47042721 acccaaaatcttgatgcctaaagccattgtttgggtggcttggcccttaggccggccct 47042663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 21795509 - 21795460
Alignment:
Q  297 acccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||| ||||||||||||||||||| |||| | |||||||||||||    
T  21795509 acccaaaatcttgaggcctaaagcccttgcttggatggcttggcccttag 21795460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 141 - 346
Target Start/End: Complemental strand, 27572663 - 27572457
Alignment:
Q  141 ttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaat 240  Q
    |||||||| ||||||| |  ||||||  |||||||||||||||| ||||| ||||||| |||||||| ||||| ||||||| |||  |||||||| ||||    
T  27572663 ttatataatatcaatttttcggagaccgaaatttgaattcatgaacaagagtaattgaagcatttttggtaattagttaagttatcaaaatatctataat 27572564  T
Q  241 ttatttgtcatataatataattataaccaaattaattttttagaggc-nnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttgcttgg 339  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||| |||||||||||||    
T  27572563 ttatctgtcatataatataattataaccaaattaattttttagaggcattttttttcatccaaaattttgaggcctaaagcccttgcttgggttgcttgg 27572464  T
Q  340 cccttag 346  Q
    |||||||    
T  27572463 cccttag 27572457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 60 - 287
Target Start/End: Original strand, 9363168 - 9363388
Alignment:
Q  60 agggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtg 159  Q
    ||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||| ||    
T  9363168 agggccgacccaacagattaagaggcttaaaacaaaaattttaatgtggcttttaaaaatatttttttt--aacagaatatttatataaaatcaattttg 9363265  T
Q  160 tggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatata 259  Q
    ||||||  ||||||||||||||||||||||| ||||||| || ||||| | |||||||||     |||||||   |||||||||| |||| |||||||||    
T  9363266 tggagatcaaaatttgaattcatgaccaagagtaattgaggcctttttggcaatcagtta-----tgcaaatgcttgtaatttatctgtcgtataatata 9363360  T
Q  260 attataaccaaattaattttttagaggc 287  Q
     ||||||||||||||||||| |||||||    
T  9363361 cttataaccaaattaattttatagaggc 9363388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 136 - 357
Target Start/End: Original strand, 22851215 - 22851437
Alignment:
Q  136 aatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatct 235  Q
    |||| ||||||||| | |||| |||  |||| |||||||| | |||||||||||| ||||||| || ||||| |||||||||||| |||||||||| |||    
T  22851215 aatatttatataaagtaaattttgtaaagaccaaaatttggaatcatgaccaagagtaattgaagcctttttggtaatcagttaaactatgcaaatgtct 22851314  T
Q  236 gtaatttatttgtcatataatataattataaccaaattaattttttagaggc-nnnnnnnncacccaaaattttgaggcctaaagcccttgtttgggttg 334  Q
    ||  ||||| | |||||| ||||| |||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||| ||||||||    
T  22851315 gttgtttatctatcatatgatatacttataaccaaattaattttttagaggcgttttttttcacccaaaattttgaggtctaaagcccttgcttgggttg 22851414  T
Q  335 cttggcccttagactggccctga 357  Q
    ||| |||||||| | ||||||||    
T  22851415 cttagcccttaggccggccctga 22851437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 36193317 - 36193469
Alignment:
Q  135 gaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatc 234  Q
    ||||| |||||| ||||||||| ||||||||  ||||||||||||||||| ||||| ||||||| |  |||||  |||||||||||||| ||||||||||    
T  36193317 gaatatttatatgaaatcaattttgtggagatcaaaatttgaattcatgatcaagagtaattgaagtctttttgataatcagttaagctgtgcaaatatc 36193416  T
Q  235 tgtaatttatttgtcatataatataattataaccaaattaattttttagaggc 287  Q
    ||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  36193417 tgtaattcatttgcaatataatatacttataaccaaattaattttttagaggc 36193469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 134 - 284
Target Start/End: Complemental strand, 30563756 - 30563606
Alignment:
Q  134 agaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatat 233  Q
    |||||| |||||||||||||||| ||||||||| ||||| ||||||||||| |||||  |||||| || ||||| ||| | ||||||||||| ||||| |    
T  30563756 agaatatttatataaaatcaattttgtggagaccaaaatctgaattcatgagcaagagaaattgaagcctttttggtagttagttaagctatacaaatgt 30563657  T
Q  234 ctgtaatttatttgtcatataatataattataaccaaattaattttttaga 284  Q
    ||  ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  30563656 ctacaatttatctgtcatataatatacttataaccaaattaattttttaga 30563606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 25505450 - 25505296
Alignment:
Q  68 cccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgtgtggagact 167  Q
    ||||||||| ||||||| ||||| ||||||||||||| || | |||||||| |||        || | |||| |||||||||||||||| ||||||||      
T  25505450 cccaacagactaagaggcctaaaacaaaaattttaatatgacctttaaaaacatatttttaaaaa-ataatatttatataaaatcaattttgtggagatc 25505352  T
Q  168 aaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagct 223  Q
    ||||||||||||||||||||||| ||||||| || ||||  |||||||||||||||    
T  25505351 aaaatttgaattcatgaccaagagtaattgaagctttttaggtaatcagttaagct 25505296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 25505270 - 25505205
Alignment:
Q  217 ttaagctatgcaaatatctgtaatttatttgtcatataatataattataaccaaattaatttttta 282  Q
    ||||||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  25505270 ttaagctatgcaaatgtctgtaatttatctgtcatataatatacctataaccaaattaatttttta 25505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 12885103 - 12885045
Alignment:
Q  299 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctga 357  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  12885103 ccaaaattttgaggcctaaaacccttgtttgggttgcttgacccttagaccggccctga 12885045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 12885724 - 12885613
Alignment:
Q  147 aaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttattt 246  Q
    |||||||||| ||||||| | ||||||||||| | ||||||||| ||||||| || ||||| ||||||| |||||||||| |||  | |||| |||||||    
T  12885724 aaaatcaattttgtggagtccaaaatttgaatccttgaccaagagtaattgaggcctttttggtaatcaattaagctatgaaaacgt-tgtagtttattt 12885626  T
Q  247 gtcatataatata 259  Q
     || |||||||||    
T  12885625 atcctataatata 12885613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 19145954 - 19145910
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggccctta 345  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||    
T  19145954 aaaatcttgaggcctaaagcccttgtttgggtggcttgaccctta 19145910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 30563587 - 30563543
Alignment:
Q  302 aaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||    
T  30563587 aaattttgaggcctaaaacccttacttgggttgcttggcccttag 30563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 41732170 - 41732438
Alignment:
Q  58 gcagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagtt-atataaaatcaatt 156  Q
    ||||||||| ||| | ||||||||||| ||||| | ||||||||||| |||| ||||||||||||        |||| |||| || ||||||||||||||    
T  41732170 gcagggccggccctagagattaagaggcctaaaactaaaattttaatatggcctttaaaaatatatttttct-aacataatattttatataaaatcaatt 41732268  T
Q  157 gtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataat 256  Q
     | ||||||  ||||||||||||||||||||||| ||||| | |||||||| |||||||||||   ||||||||| |||||||||||| | |||||||||    
T  41732269 ttatggagatcaaaatttgaattcatgaccaagagtaatttaggcatttttagtaatcagttatattatgcaaatgtctgtaatttatctatcatataat 41732368  T
Q  257 ataattataaccaaattaattttttagagg-cnnnnnnnncacccaaaattttgaggcctaaagcccttg 325  Q
    ||| ||||||||| ||||| |||||||||| |        |||||| |||||||||||||||||||||||    
T  41732369 atacttataaccatattaaatttttagaggccttttttttcacccataattttgaggcctaaagcccttg 41732438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 28440919 - 28440818
Alignment:
Q  131 aacagaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaa 230  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||| || ||||| ||||||||||||| ||||||||    
T  28440919 aacagaatatttatataaaatcaattttgtggagattaaaatttgaatttatgaccaagagtaattgaagcctttttggtaatcagttaaggtatgcaaa 28440820  T
Q  231 ta 232  Q
    ||    
T  28440819 ta 28440818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 37941227 - 37941359
Alignment:
Q  134 agaatagttatataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatat 233  Q
    |||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||| |  |||||| || | ||||||| ||| ||||| |    
T  37941227 agaatatttatataaaatcaattttgttgagaccaaaatttgaattcatgaccaagagtaattgaggtcttttttatagtgagttaagttatacaaatgt 37941326  T
Q  234 ctgtaatttatttgtcatataatataattataa 266  Q
    ||| ||||||| | |||||||||||| ||||||    
T  37941327 ctgcaatttatctatcatataatatacttataa 37941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 28440810 - 28440751
Alignment:
Q  223 tatgcaaatatctgtaatttatttgtcatataatataattataaccaaattaattttttagag 285  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  28440810 tatgcaaatatctgtaatttatttgtcatataatata---ctaaccaaattaattttttagag 28440751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 43585682 - 43585727
Alignment:
Q  301 aaaattttgaggcctaaagcccttgtttgggttgcttggcccttag 346  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  43585682 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttag 43585727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 19528013 - 19527955
Alignment:
Q  299 ccaaaattttgaggcctaaagcccttgtttgggttgcttggcccttagactggccctga 357  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||||| | ||||||||    
T  19528013 ccaaaattttgaggcctaaagtcattgattgggttgcttggcacttaggccggccctga 19527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 286
Target Start/End: Original strand, 7412 - 7637
Alignment:
Q  59 cagggccgtcccaacagattaagaggtctaaagcaaaaattttaatgtggcttttaaaaatatannnnnnncaacagaatagttatataaaatcaattgt 158  Q
    |||||||| |||||| |||||||||| |||||||||||  ||||||||||| ||||||| |||         |||||||||  |||| || ||||||| |    
T  7412 cagggccgacccaacggattaagaggcctaaagcaaaagatttaatgtggcctttaaaattattatttttt-aacagaatatatataaaatatcaatttt 7510  T
Q  159 gtggagactaaaatttgaattcatgaccaagaataattgatgcattttttgtaatcagttaagctatgcaaatatctgtaatttatttgtcatataatat 258  Q
     | ||||| ||||||| ||||||     |||  ||||||| || ||||| || ||||||||||||||| |||| ||| |||||||| | |||||||||||    
T  7511 atagagaccaaaatttcaattcacagataagcgtaattgaggc-tttttggttatcagttaagctatgaaaatgtctataatttatctatcatataatat 7609  T
Q  259 aattataaccaaattaattttttagagg 286  Q
      || |||||||||||||||||||||||    
T  7610 gcttctaaccaaattaattttttagagg 7637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 2354 - 2300
Alignment:
Q  144 tataaaatcaattgtgtggagactaaaatttgaattcatgaccaagaataattga 198  Q
    ||||||||||||| | | ||||  ||||||||||||||||||||||| |||||||    
T  2354 tataaaatcaattttatagagatcaaaatttgaattcatgaccaagagtaattga 2300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University