View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_8 (Length: 478)
Name: NF1147_low_8
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 34765348 - 34765170
Alignment:
| Q |
30 |
gaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaacc |
129 |
Q |
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| T |
34765348 |
gaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaacc |
34765249 |
T |
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| Q |
130 |
ttgaacattgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcacttta |
208 |
Q |
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| T |
34765248 |
ttgaacattgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcacttta |
34765170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 38 - 314
Target Start/End: Original strand, 6440469 - 6440754
Alignment:
| Q |
38 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacat |
137 |
Q |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacac |
6440568 |
T |
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| Q |
138 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcactttactattgtatgtttttgtttgg-------- |
229 |
Q |
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| T |
6440569 |
tattg-taatgtgcccttcgaagatatttgatttttggtttggaattgggttttagaagtaggttaattttctatagtttgtatttgtttggcttgacac |
6440667 |
T |
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| Q |
230 |
--ctttataatacaaatttagttccgccttggcacgttttttggtctcaaatgttggtcctgtaacttgttatgccttaactcaaaa |
314 |
Q |
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| T |
6440668 |
atctttatactacaaattttgttctatcttggcttatgttttgatctcaaattttggtcttgtaacttgtcatgccttatctcaaaa |
6440754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
61 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
136 |
Q |
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| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
61 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
136 |
Q |
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| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 32588704 - 32588756
Alignment:
| Q |
389 |
gaatacgcttcctttaccgagtatccatttcttgaccattcccatttgtcttc |
441 |
Q |
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| T |
32588704 |
gaatacgcttcttttaccgaatatccatttctagaccaaacccacttgtcttc |
32588756 |
T |
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