View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1147_low_9 (Length: 427)
Name: NF1147_low_9
Description: NF1147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1147_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 7423947 - 7424356
Alignment:
| Q |
1 |
cgtactttacttatacaatccaattctattttgttttaaacttttgatttataggtgaagagaactttggtaatatagagtttcatcgtgagataaatat |
100 |
Q |
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| T |
7423947 |
cgtactttact-atacaatccaattctattttattttaaacttttgatttataggtgaagagaactttggtaatgtagagtttgatcgtgagataaatat |
7424045 |
T |
|
| Q |
101 |
tattcgatcaataactgtttgatatgtaagttaaattcaatttatttttattttaaaccattcattgatagtgaagtttattaacaagctgaattccacc |
200 |
Q |
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| T |
7424046 |
tattcgatcaataactgtttgatatgtaagttaaactcaatttatttttattttaaaccattcattgatagtgaagtttattaaccagctgaattccacc |
7424145 |
T |
|
| Q |
201 |
----aattgattataccgtccaattctatgcttaagtagattttaattcaaccattaacaatagt--actaatactgtttcctattatgattccaaaagt |
294 |
Q |
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| T |
7424146 |
acttaattgattataccgtccaattctatgcttaagtagattttaattcaaccattaacaatagtacactaatactgtttcctattatgattccaaa--- |
7424242 |
T |
|
| Q |
295 |
atttgttattagtatttgttattaggggcccgataaaacaaatcatctctctttcaccaactataagactactatattatcccatccaatattaaaaaac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7424243 |
----------agtatttgttattaggggcccgataaaacaaatcatctctctttcaccaactataagactactatattatcccatccaatattaaaaaac |
7424332 |
T |
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| Q |
395 |
tactacaccatgcattagtattat |
418 |
Q |
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||||||||||||||||| |||||| |
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| T |
7424333 |
tactacaccatgcattattattat |
7424356 |
T |
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