View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_high_14 (Length: 393)
Name: NF11480_high_14
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 92245 - 92627
Alignment:
| Q |
1 |
aagaacacagttgttacatatatcttctcctcagttctactccaccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92245 |
aagaacacagttgttacatatatcttctcctcagttctactccaccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataacttt |
92344 |
T |
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| Q |
101 |
atttaaattatactctaatatttactcatcataattttacagtgtcgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92345 |
atttaaattatactctaatatttactcatcataattttacagtgccgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctt |
92444 |
T |
|
| Q |
201 |
tgaggtaaggggagagannnnnnnnctttgatgttcttgatgtgtttaataaattgtttgcaaattttgttggctgaaatatcttg---gtttgtgc--a |
295 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
92445 |
tgaggtaaggggagaga-tttttttctttgatgttcttgatgtgtttaataaattgtttgcaaattttgttggctgaaatatcttggtcgtttgtgctaa |
92543 |
T |
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| Q |
296 |
atgtgacgtgcgtatgattgtagaattattagataaattttgattaggttttggatgaaatattgagatatatattatatgttc |
379 |
Q |
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| T |
92544 |
atgtgacgtgtgtatgattgtagaattattagataaattttgattaggttttggatgaaatattgagatatatattatatgttc |
92627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 40874037 - 40873655
Alignment:
| Q |
1 |
aagaacacagttgttacatatatcttctcctcagttctactccaccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40874037 |
aagaacacagttgttacatatatcttctcctcagttctactccaccgttaccgttgcgatggtgagatgttctcaactttcattttaaaattataacttt |
40873938 |
T |
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| Q |
101 |
atttaaattatactctaatatttactcatcataattttacagtgtcgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40873937 |
atttaaattatactctaatatttactcatcataattttacagtgccgttgtcattctcttgagtttcgatttcaagcatttgatcgtgcactttgatctt |
40873838 |
T |
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| Q |
201 |
tgaggtaaggggagagannnnnnnnctttgatgttcttgatgtgtttaataaattgtttgcaaattttgttggctgaaatatcttg---gtttgtgc--a |
295 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
40873837 |
tgaggtaaggggagaga-tttttttctttgatgttcttgatgtgtttaataaattgtttgcaaattttgttggctgaaatatcttggtcgtttgtgctaa |
40873739 |
T |
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| Q |
296 |
atgtgacgtgcgtatgattgtagaattattagataaattttgattaggttttggatgaaatattgagatatatattatatgttc |
379 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40873738 |
atgtgacgtgtgtatgattgtagaattattagataaattttgattaggttttggatgaaatattgagatatatattatatgttc |
40873655 |
T |
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