View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_high_17 (Length: 327)
Name: NF11480_high_17
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 43612523 - 43612830
Alignment:
| Q |
18 |
attaactgtgatcttaattgaccaaaacccactccacacacataattgagtgtgaccaagtagtattacgagcttaccctatgcgcgttccagcgtgacc |
117 |
Q |
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| T |
43612523 |
attaactgtgattttaattgaccaaaaaccactccacatacataattgagtgtgaccaagtagtattacaggcttaccctatgcgcgttccagcgtgacc |
43612622 |
T |
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| Q |
118 |
ggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggccaataataggcaaggtcatggattaatagt |
217 |
Q |
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| T |
43612623 |
ggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggccaataataggcaaggtcatggattaatagt |
43612722 |
T |
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| Q |
218 |
ccttggtttcggttcactactgatttccttgtatatccatcaggattattgggagaagtaaccagctcaatgtaaggaccatctttgttaaaactctctg |
317 |
Q |
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| T |
43612723 |
ccttggtttcggttcactactgatttccttgtatatccatcaggattattaggagaagtaaccagctcaatgtaaggaccatctttgttaaaactctctg |
43612822 |
T |
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| Q |
318 |
cttctcca |
325 |
Q |
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| T |
43612823 |
catctcca |
43612830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 303
Target Start/End: Original strand, 34686655 - 34686868
Alignment:
| Q |
90 |
cttaccctatgcgcgttccagcgtgaccggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggcca |
189 |
Q |
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| T |
34686655 |
cttaccctatgcgcattccagcatgaccagtgcttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggcca |
34686754 |
T |
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| Q |
190 |
ataataggcaaggtcatggattaatagtccttggtttcggttcactactgatttccttgtatatccatcaggattattgggagaagtaaccagctcaatg |
289 |
Q |
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| T |
34686755 |
gtagtaggcaagatcatgaaccagaagtccttgacttctattgaccttagacttcctcacatgtccatcaggattatttggtgaagttaccagctcaatg |
34686854 |
T |
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| Q |
290 |
taaggaccatcttt |
303 |
Q |
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| T |
34686855 |
tagggaccatcttt |
34686868 |
T |
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