View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11480_high_18 (Length: 316)

Name: NF11480_high_18
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11480_high_18
NF11480_high_18
[»] chr6 (45 HSPs)
chr6 (18-305)||(27696883-27697169)
chr6 (18-305)||(27609414-27609700)
chr6 (18-305)||(27716793-27717079)
chr6 (18-305)||(27680564-27680850)
chr6 (17-305)||(31286158-31286442)
chr6 (17-305)||(27591303-27591595)
chr6 (130-305)||(27704669-27704843)
chr6 (17-305)||(27675900-27676194)
chr6 (124-305)||(28787855-28788035)
chr6 (124-305)||(28793976-28794156)
chr6 (110-305)||(27603080-27603275)
chr6 (162-305)||(26624864-26625007)
chr6 (162-305)||(26730841-26730984)
chr6 (168-305)||(26648072-26648209)
chr6 (168-305)||(26754040-26754177)
chr6 (17-305)||(26804060-26804356)
chr6 (17-235)||(27425902-27426125)
chr6 (17-102)||(26625026-26625113)
chr6 (17-102)||(26731003-26731090)
chr6 (206-305)||(26813151-26813250)
chr6 (163-305)||(26863173-26863315)
chr6 (17-61)||(25491593-25491637)
chr6 (16-102)||(26637369-26637455)
chr6 (16-102)||(26743335-26743421)
chr6 (16-61)||(27663490-27663535)
chr6 (17-61)||(26648278-26648322)
chr6 (17-61)||(26754246-26754290)
chr6 (17-61)||(26960920-26960964)
chr6 (162-256)||(27529741-27529838)
chr6 (203-305)||(25491785-25491887)
chr6 (17-55)||(28788089-28788127)
chr6 (17-55)||(28794210-28794248)
chr6 (24-61)||(26813339-26813376)
chr6 (24-61)||(26951591-26951628)
chr6 (24-61)||(26979230-26979267)
chr6 (246-305)||(26885684-26885743)
chr6 (189-305)||(27663671-27663783)
chr6 (27-94)||(26850468-26850534)
chr6 (17-56)||(27704537-27704576)
chr6 (16-58)||(26657820-26657862)
chr6 (16-58)||(26763791-26763833)
chr6 (19-61)||(26885915-26885957)
chr6 (19-61)||(27216300-27216342)
chr6 (24-61)||(26863439-26863476)
chr6 (16-68)||(27602997-27603049)
[»] chr8 (1 HSPs)
chr8 (18-305)||(29272132-29272418)
[»] chr1 (2 HSPs)
chr1 (17-305)||(266648-266929)
chr1 (24-61)||(28125981-28126018)
[»] scaffold0349 (1 HSPs)
scaffold0349 (162-305)||(1976-2119)
[»] scaffold1870 (2 HSPs)
scaffold1870 (110-305)||(383-578)
scaffold1870 (17-55)||(616-654)
[»] scaffold0419 (2 HSPs)
scaffold0419 (110-305)||(9101-9297)
scaffold0419 (17-55)||(9335-9373)
[»] scaffold0277 (4 HSPs)
scaffold0277 (110-294)||(3088-3272)
scaffold0277 (110-294)||(12051-12235)
scaffold0277 (17-55)||(3013-3051)
scaffold0277 (17-55)||(11976-12014)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-235)||(61238-61461)
[»] chr4 (6 HSPs)
chr4 (17-235)||(18075430-18075653)
chr4 (17-68)||(18653834-18653885)
chr4 (17-59)||(18677916-18677958)
chr4 (17-59)||(18687970-18688012)
chr4 (17-59)||(18722430-18722472)
chr4 (17-59)||(18729852-18729894)
[»] chr2 (1 HSPs)
chr2 (17-102)||(17991504-17991586)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 27696883 - 27697169
Alignment:
Q  18 attcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27696883 attcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaataaaaataagatatagaaatattaacatgtaa 27696982  T
Q  118 ttgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatc 217  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27696983 ttgagtgaaaagaaatgctagtatcagatgatca-tatttagtgcaaatagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatc 27697081  T
Q  218 ttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27697082 ttactcacagtgttttctcttaaaacccgagttatatcatcctgacagcataacctacttctttctccaggctctttagttgattctt 27697169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 27609414 - 27609700
Alignment:
Q  18 attcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  27609414 attcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaataaaaataagacatagatatattaacatgtaa 27609513  T
Q  118 ttgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatc 217  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27609514 ttgagtgaaaagaaatgctagtatcagatgatca-tatttagtgcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatc 27609612  T
Q  218 ttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  27609613 ttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 27609700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 27716793 - 27717079
Alignment:
Q  18 attcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27716793 attcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaataaaaataagatatagaaatattaacatgtaa 27716892  T
Q  118 ttgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatc 217  Q
    |||||||||||||||| || || | ||||||||| |||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  27716893 ttgagtgaaaagaaatgctcgttttagatgatca-tatttagttcaaaaagagcaaagttgtattaaaactaaataacaaaatgatcatagatatcaatc 27716991  T
Q  218 ttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  27716992 ttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 27717079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 27680850 - 27680564
Alignment:
Q  18 attcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  27680850 attcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaataaaaataagacatagatatattaacatgtaa 27680751  T
Q  118 ttgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatc 217  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27680750 ttgagtgaaaagaaatgctagtatcagatgatc-atatttagtgcaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatc 27680652  T
Q  218 ttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
     ||||||||||||||||| |||||||  ||| |||||| || ||||  ||||||||||||| ||||||||||||||||| ||||||||    
T  27680651 atactcacagtgttttcttttaaaacatgaattatatcttcttgacgccataacctacttcgttctccaggctctttaggtgattctt 27680564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 31286442 - 31286158
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaagataaaag------catgaatcaacaacaataaaaataagatatagaaatattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||       ||| ||||||| |||||||||||||||||| || | ||| |    
T  31286442 aattcatatatatcatttcaattttactagttcccttttaacaaaaaaaaaaaaaagaacataaatcaaccacaataaaaataagatatggagaaattta 31286343  T
Q  111 catgtaattgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagat 210  Q
    ||||||||| ||| |||| |||||||||||| ||||| |||           ||||||||||||||||| ||||||  |||||||||| ||| |||||||    
T  31286342 catgtaattaagtaaaaataaatactagtatgagatggtcat----------aaaaagagcaaagtcgttttaaaactaaataacaaattgaacatagat 31286253  T
Q  211 atcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||||||||  ||||| |  ||||||||||||| ||||  |||| ||||||||||||||| |||||||||| ||||||||    
T  31286252 atcaatcttactcacagtgttttcatttaaagcatgaactatatcatcttgacaccatagcctacttctttctcctggctctttaggtgattctt 31286158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 27591303 - 27591595
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaagataaaagca-----tgaatcaacaacaataaaaataagatatagaaatattaac 111  Q
    |||||||| ||||||||||| |||||| |||||||| |||||||| ||||||  |     || |||||| |||||||||||  | || ||| | ||| ||    
T  27591303 aattcatacatatcatttcagttttaccagttccctgttaacaaaaataaaaataaaaaatgcatcaaccacaataaaaatctgttacagagaaatttac 27591402  T
Q  112 atgtaattgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagata 211  Q
    |||||||| |||| ||| | |||||||||| ||||| ||| |||||||| ||||| ||||||||| |||||||||  |||||||||| ||| ||||||||    
T  27591403 atgtaattaagtggaaaaatatactagtatgagatggtca-tatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagata 27591501  T
Q  212 tcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||| ||||||||||||| |||||||  ||||||||||||| |||   |||||||| |||||||||||||||||||||| ||||||||    
T  27591502 tcaatcttacgcacagtgttttcttttaaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattctt 27591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 27704669 - 27704843
Alignment:
Q  130 aaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtg 229  Q
    |||||||||||| ||||| ||| |||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27704669 aaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcatattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtg 27704767  T
Q  230 ttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||| |||| ||   |||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||    
T  27704768 ttttcttttaagacattaactatatcatcatggcagcataacctacttctttctccaggctctttaattgattctt 27704843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 27675900 - 27676194
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaagataaaagca-----tgaatcaacaacaataaaaataagatatagaaatattaac 111  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||| ||||||  |     || |||||| |||||||||||    || ||| | ||| ||    
T  27675900 aattcatacatatcatttcagttttaccagttcccttttaacaaaaataaaaataaaaaatgcatcaaccacaataaaaatcttttacagagaaatttac 27675999  T
Q  112 atgtaattgagtg--aaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcataga 209  Q
    |||||||| ||||  |||| |||||||| ||| ||||| ||| |||||||| ||||| ||||||| | |||||||||  |||||||||| ||| ||||||    
T  27676000 atgtaattaagtggaaaaaaaaatactaatatgagatggtca-tatttagtccaaaatgagcaaaattgtattaaaactaaataacaaattgaacataga 27676098  T
Q  210 tatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||| |||   |||||||| |||||||||||||||||||||| ||||||||    
T  27676099 tatcaatcttactcacagtgttttctgttaaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattctt 27676194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 28788035 - 28787855
Alignment:
Q  124 gaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactc 223  Q
    ||||| |||||||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||  |||||||||| ||| |||| ||||||||| |||||    
T  28788035 gaaaacaaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactc 28787937  T
Q  224 acagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    || ||||||||| |||||||   |||||||||||| ||||  |||||||||||||||||||||||||||||||  |||||||    
T  28787936 acggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctctttaggcgattctt 28787855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 28794156 - 28793976
Alignment:
Q  124 gaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactc 223  Q
    ||||| |||||||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||  |||||||||| ||| |||| ||||||||| |||||    
T  28794156 gaaaacaaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactc 28794058  T
Q  224 acagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    || ||||||||| |||||||   |||||||||||| ||||  |||||||||||||||||||||||||||||||  |||||||    
T  28794057 acggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctctttaggcgattctt 28793976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 110 - 305
Target Start/End: Original strand, 27603080 - 27603275
Alignment:
Q  110 acatgtaattgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaa-gtcgtattaaaagcaaataacaaaatgatcatag 208  Q
    |||||||||| |||| ||| ||||| |||||| ||||||||| |||||||| |||||||| |||| ||| ||||||||  |||||||||| ||||  ||     
T  27603080 acatgtaattaagtggaaaaaaataatagtatgagatgatca-tatttagtccaaaaagaccaaaagtcatattaaaactaaataacaaattgatattat 27603178  T
Q  209 atatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||||||||||| ||| |||  |||||||||| || ||||  ||||||||||||||||||||||||||||||| ||||||||    
T  27603179 atatcaatcttactcacagtgttttctgttagaacatgaactatatcgtcttgacaccataacctacttctttctccaggctctttaggtgattctt 27603275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 26625007 - 26624864
Alignment:
Q  162 caaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctg 261  Q
    ||||||||||||||| |||||||||  |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||  ||| ||||||||| ||    
T  26625007 caaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatcttg 26624908  T
Q  262 actgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||  ||||| ||||||| ||||||||||||||||| ||||||||    
T  26624907 acaccataatctacttcgttctccaggctctttaggtgattctt 26624864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 26730984 - 26730841
Alignment:
Q  162 caaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctg 261  Q
    ||||||||||||||| |||||||||  |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||  ||| ||||||||| ||    
T  26730984 caaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatcttg 26730885  T
Q  262 actgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||  ||||| ||||||| ||||||||||||||||| ||||||||    
T  26730884 acaccataatctacttcgttctccaggctctttaggtgattctt 26730841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 26648209 - 26648072
Alignment:
Q  168 gagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgca 267  Q
    |||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||  ||||||| ||||| ||||  ||    
T  26648209 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26648110  T
Q  268 taacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26648109 taacctactttgttctccaggctctttacgtgattctt 26648072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 305
Target Start/End: Complemental strand, 26754177 - 26754040
Alignment:
Q  168 gagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgca 267  Q
    |||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||  ||||||| ||||| ||||  ||    
T  26754177 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26754078  T
Q  268 taacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26754077 taacctactttgttctccaggctctttacgtgattctt 26754040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 26804356 - 26804060
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaaca----aagataaaagcatga----atcaacaacaataaaaataagatatagaaatatt 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||    || | ||||  || |    |||||  ||||||| ||||||||||||| | |||    
T  26804356 aattcatatttatcatttcaattttactagttcccttttaacacaaaaaaaaaaaaaaataacataatcaatcacaataacaataagatatagagaaatt 26804257  T
Q  109 aacatgtaattgagtgaaaagaaa-tactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcata 207  Q
     | |||||||| |||||||| ||| ||||||||| ||||| ||| ||| |||| | ||||  ||||||||||||  |||  |||||||||| ||| ||||    
T  26804256 tatatgtaattaagtgaaaaaaaaatactagtatgagatggtca-tatgtagtcctaaaaatgcaaagtcgtatctaaactaaataacaaattgaacata 26804158  T
Q  208 gatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
     |||||||||||||||||| |||||||| ||| |||  |||||||||| || ||||  ||||||||||||| || | |||| ||||||| ||||||||    
T  26804157 aatatcaatcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattctt 26804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 27425902 - 27426125
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaac------aaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaa 110  Q
    |||||||||||||||||||||||||||| |||||||||||||      ||| | ||||  |||||||||| |||||| |||||||||| |||||| |  |    
T  27425902 aattcatatatatcatttcaattttactggttcccttttaacgaaaaaaaaaaaaaaaagatgaatcaaccacaatacaaataagatagagaaattt--a 27425999  T
Q  111 catgtaattgagtgaaaagaaatactagtatcagatgatca-atatttagtgcaaaaagagcaaagtcgtattaaaagc-aaataacaaaatgatcatag 208  Q
      ||||||| | ||||||||| || |||||||||||| |   |||  || | |||||||||||||||| | |||||||| |||||||||| || || |      
T  27426000 tgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacata-tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgc 27426098  T
Q  209 atatcaatcttactcacagtgttttct 235  Q
    |||||||||||||||||||||||||||    
T  27426099 atatcaatcttactcacagtgttttct 27426125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26625113 - 26625026
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccc-ttttaac-aaagataaaagcatgaatcaacaacaataaaaataagatataga 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| | |||| ||||||||||| |||||||||||||||||||||    
T  26625113 aattcatatatatcatttcaattttactagttccctttttaacaaaaaagaaaaacatgaatcaaccacaataaaaataagatataga 26625026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26731090 - 26731003
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccc-ttttaac-aaagataaaagcatgaatcaacaacaataaaaataagatataga 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| | |||| ||||||||||| |||||||||||||||||||||    
T  26731090 aattcatatatatcatttcaattttactagttccctttttaacaaaaaagaaaaacatgaatcaaccacaataaaaataagatataga 26731003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 26813250 - 26813151
Alignment:
Q  206 tagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||||| |||||||| |||||||  ||||||||||||| ||||  |||| |||||||| |||||| || |||| || ||||||||    
T  26813250 tagatatcaatcttactcacaatgttttcttttaaaacatgaactatatcatcttgacaccatagcctacttcgttctcctggttcttcaggtgattctt 26813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 305
Target Start/End: Complemental strand, 26863315 - 26863173
Alignment:
Q  163 aaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctga 262  Q
    |||| ||||||||| || |||||  | ||||||| | || ||||| |||||||||||||||||||||||||||  ||||||  | | ||||||||| |||    
T  26863315 aaaacgagcaaagttgtgttaaagactaataacagattgttcataaatatcaatcttactcacagtgttttcttctaaaacgtggattatatcatcatga 26863216  T
Q  263 ctgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |  ||||||||||||| ||| || ||||||||||  |||||||    
T  26863215 caccataacctacttcgttcacccggctctttaggagattctt 26863173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 25491593 - 25491637
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25491593 aattcatatatatcatttcaattttactagttcccttttaacaaa 25491637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 26637455 - 26637369
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatataga 102  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| | || |  || ||||||  |||||| ||||||||||||||    
T  26637455 caattcagatatatcatttgaattttactagttcccttttaacaaaaaaaataaaattaatcaatgacaatacaaataagatataga 26637369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 26743421 - 26743335
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatataga 102  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| | || |  || ||||||  |||||| ||||||||||||||    
T  26743421 caattcagatatatcatttgaattttactagttcccttttaacaaaaaaaataaaattaatcaatgacaatacaaataagatataga 26743335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 27663490 - 27663535
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  27663490 caattcagatatatcatttcaattttactagttcccttttaacaaa 27663535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26648322 - 26648278
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26648322 aattcatatatatcatttcaattttactagttccctttcaacaaa 26648278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26754290 - 26754246
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  26754290 aattcatatatatcatttcaattttactagttccctttcaacaaa 26754246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26960964 - 26960920
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  26960964 aattcaaatatatcatttcaattttactagttcccttttaacaaa 26960920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 27529741 - 27529838
Alignment:
Q  162 caaaaagagcaaagtcgtattaaaagcaaa---taacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatca 256  Q
    |||||||||||| ||| | |||||||| ||   ||||||| || || |||||||||||||||||||||||||||| | |||||||  |||||||||||    
T  27529741 caaaaagagcaatgtcatgttaaaagctaaatttaacaaattgttcctagatatcaatcttactcacagtgtttttttttaaaacatgaactatatca 27529838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 25491785 - 25491887
Alignment:
Q  203 tcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgatt 302  Q
    |||||||||||||||||||| || |||||||||||||||||  |||| ||||||||  |||  || |||||||| | ||||||||| || |||  |||||    
T  25491785 tcatagatatcaatcttacttaccgtgttttctcttaaaacttgaaccatatcatcgggacaccacaacctactacgttctccaggatcattacgtgatt 25491884  T
Q  303 ctt 305  Q
    |||    
T  25491885 ctt 25491887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 28788127 - 28788089
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28788127 aattcatatatatcatttcaattttactagttccctttt 28788089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 28794248 - 28794210
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28794248 aattcatatatatcatttcaattttactagttccctttt 28794210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26813376 - 26813339
Alignment:
Q  24 atatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26813376 atatatcatttcaattttactagttcccttttaacaaa 26813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26951628 - 26951591
Alignment:
Q  24 atatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26951628 atatatcatttcaattttactagttcccttttaacaaa 26951591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26979267 - 26979230
Alignment:
Q  24 atatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26979267 atatatcatttcaattttactagttcccttttaacaaa 26979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 26885743 - 26885684
Alignment:
Q  246 gaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||| ||||  ||||||||||| | |||||||||||||||| |||||||||    
T  26885743 gaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattctt 26885684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 27663671 - 27663783
Alignment:
Q  189 aaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccagg 288  Q
    |||||||||| || ||||||||||||||||||||    ||||||| | |||||||  || |||||||||| ||||  || |||||| | |  ||||||||    
T  27663671 aaataacaaattgttcatagatatcaatcttact----gtgttttgttttaaaacatgagctatatcatcatgacgccacaacctagtgcgctctccagg 27663766  T
Q  289 ctctttagttgattctt 305  Q
    ||||||| |||||||||    
T  27663767 ctctttaattgattctt 27663783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 26850534 - 26850468
Alignment:
Q  27 tatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataa 94  Q
    ||||||||||||||||||| |||||||| |||||| | |||| ||| ||||||| |||||| ||||||    
T  26850534 tatcatttcaattttactacttccctttaaacaaa-aaaaaaacattaatcaaccacaatacaaataa 26850468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 27704537 - 27704576
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttta 56  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  27704537 aattcatatacatcatttgaattttactagttccctttta 27704576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 26657862 - 26657820
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaac 58  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||    
T  26657862 caattcagatatatcatttcaatgttactggttcccttttaac 26657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 26763833 - 26763791
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaac 58  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||    
T  26763833 caattcagatatatcatttcaatgttactggttcccttttaac 26763791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 26885957 - 26885915
Alignment:
Q  19 ttcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  26885957 ttcagatatatcatttcaatgttgctagttcccttttaacaaa 26885915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 27216342 - 27216300
Alignment:
Q  19 ttcatatatatcatttcaattttactagttcccttttaacaaa 61  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  27216342 ttcaaatatatcatttcaattttccaagttcccttttaacaaa 27216300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 26863476 - 26863439
Alignment:
Q  24 atatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  26863476 atataccatttcaattttactagttcccttttcacaaa 26863439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 27602997 - 27603049
Alignment:
Q  16 caattcatatatatcatttcaattttactagttcccttttaacaaagataaaa 68  Q
    ||||||| || |||||||||||| || ||||||||||||||| ||| ||||||    
T  27602997 caattcaaatgtatcatttcaatgttcctagttcccttttaagaaaaataaaa 27603049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 29272132 - 29272418
Alignment:
Q  18 attcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgtaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||||||| || ||||||||||||| ||    
T  29272132 attcgtatatatcatttcaattttactagttcccttttaacaaagaaaaaaatatgaatcaaccacaataaaaataagatgtacaaatattaacatgcaa 29272231  T
Q  118 ttgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatc 217  Q
    ||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  29272232 ttgagtgaaaataaatgctagtatcagatgat-aatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatagatatcaatc 29272330  T
Q  218 ttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  29272331 ttactcacagtgttttctcttaaaacacgaactagatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 29272418  T

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Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 266648 - 266929
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaag-ataaaagcatgaatcaacaacaataaaaataagatatagaaatattaacatgt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||| | | | ||||||    
T  266648 aattcatatatatcatttcaactttactagttcccttttaacaaaacaaaaaaacatgaatcaacaacaataaaaataagatatagataaacttacatgt 266747  T
Q  116 aattgagtgaaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaa 215  Q
    || |       || |||||||||||| ||||| ||| ||||| || |||||||||||||||||||||||||  |||||||||| ||||||| ||||||||    
T  266748 aaat-------aataaatactagtatgagatggtca-tattttgtccaaaaagagcaaagtcgtattaaaactaaataacaaattgatcattgatatcaa 266839  T
Q  216 tcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||   |||||||  ||||||||||||| ||||  ||||||||||||| ||||||||||||||||| ||||||||    
T  266840 tcttactcacagtgtttttatttaaaacatgaactatatcatcttgacaccataacctacttcgttctccaggctctttaggtgattctt 266929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 28125981 - 28126018
Alignment:
Q  24 atatatcatttcaattttactagttcccttttaacaaa 61  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  28125981 atatatcatttcaatgttaccagttcccttttaacaaa 28126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 1976 - 2119
Alignment:
Q  162 caaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctg 261  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1976 caaaaagagcaaagttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctg 2075  T
Q  262 actgcataacctacttctttctccaggctctttagttgattctt 305  Q
    || ||||||||||||||||||||||||||||||| |||||||||    
T  2076 acagcataacctacttctttctccaggctctttaattgattctt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 110 - 305
Target Start/End: Complemental strand, 578 - 383
Alignment:
Q  110 acatgtaattgagtg-aaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatag 208  Q
    |||||||||| |||| |||| |||||||||||| ||||| ||| |||||||| |||||||||||||||| ||| ||||  |||||||||| ||| |||||    
T  578 acatgtaattaagtggaaaaaaaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatag 480  T
Q  209 atatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    ||||||||||||||||||||||||||| |||||||   |||||||||||| ||||  |||||||||||||||||||| ||||||||||  |||||||    
T  479 atatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctctttaggcgattctt 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 654 - 616
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  654 aattcatatatatcatttcaatttttctagttccctttt 616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 305
Target Start/End: Complemental strand, 9297 - 9101
Alignment:
Q  110 acatgtaattgagtg--aaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcata 207  Q
    |||||||||| ||||  |||| |||||||| ||| ||||| ||| |||||||| |||||||||||||||| ||| ||||  |||||||||| ||| ||||    
T  9297 acatgtaattaagtggaaaaaaaaatactaatatgagatggtca-tatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacata 9199  T
Q  208 gatatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctctttagttgattctt 305  Q
    |||||||||||||||||||||||||||| |||||||   |||||||||||| ||||  |||||||||||||||||||| ||||||||||  |||||||    
T  9198 gatatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctctttaggcgattctt 9101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 9373 - 9335
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  9373 aattcatatatatcatttcaatttttctagttccctttt 9335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 3088 - 3272
Alignment:
Q  110 acatgtaattgagtg-aaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatag 208  Q
    |||||||||| |||| |||| |||||||||||| ||||| ||| |||||||| |||||||||||||||| ||| ||||  |||||||||| ||| |||||    
T  3088 acatgtaattaagtggaaaaaaaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatag 3186  T
Q  209 atatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctcttt 294  Q
    ||||||||||||||||||||||||||| |||||||   |||||||||||| | ||  ||||| |||||||||||||||||||||||    
T  3187 atatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 3272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 294
Target Start/End: Original strand, 12051 - 12235
Alignment:
Q  110 acatgtaattgagtg-aaaagaaatactagtatcagatgatcaatatttagtgcaaaaagagcaaagtcgtattaaaagcaaataacaaaatgatcatag 208  Q
    |||||||||| |||| |||| |||||||||||| ||||| ||| |||||||| |||||||||||||||| ||| ||||  |||||||||| ||| |||||    
T  12051 acatgtaattaagtggaaaaaaaatactagtatgagatggtca-tatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatag 12149  T
Q  209 atatcaatcttactcacagtgttttctcttaaaacccgaactatatcatcctgactgcataacctacttctttctccaggctcttt 294  Q
    ||||||||||||||||||||||||||| |||||||   |||||||||||| | ||  ||||| |||||||||||||||||||||||    
T  12150 atatcaatcttactcacagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 12235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 3013 - 3051
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3013 aattcatatatatcatttcaattttactagttccctttt 3051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 11976 - 12014
Alignment:
Q  17 aattcatatatatcatttcaattttactagttccctttt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11976 aattcatatatatcatttcaattttactagttccctttt 12014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 61461 - 61238
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaac------aaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaa 110  Q
    |||||||||||||||||||||||||||| |||||||||||||      ||| | ||||  |||||||||| |||||| |||||||||| |||||| |  |    
T  61461 aattcatatatatcatttcaattttactggttcccttttaacgaaaaaaaaaaaaaaaagatgaatcaaccacaatacaaataagatagagaaattt--a 61364  T
Q  111 catgtaattgagtgaaaagaaatactagtatcagatgatca-atatttagtgcaaaaagagcaaagtcgtattaaaagc-aaataacaaaatgatcatag 208  Q
      ||||||| | ||||||||| || |||||||||||| |   |||  || | |||||||||||||||| | |||||||| |||||||||| || || |      
T  61363 tgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacata-tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgc 61265  T
Q  209 atatcaatcttactcacagtgttttct 235  Q
    |||||||||||||||||||||||||||    
T  61264 atatcaatcttactcacagtgttttct 61238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 18075653 - 18075430
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaac------aaagataaaagcatgaatcaacaacaataaaaataagatatagaaatattaa 110  Q
    |||||||||||||||||||||||||||| ||||||||||||       ||| | ||||  |||||||||| |||||| |||||||||| |||||| |  |    
T  18075653 aattcatatatatcatttcaattttactggttcccttttaaacgaaaaaaaaaaaaaaagatgaatcaaccacaatacaaataagatagagaaattt--a 18075556  T
Q  111 catgtaattgagtgaaaagaaatactagtatcagatgatca-atatttagtgcaaaaagagcaaagtcgtattaaaagc-aaataacaaaatgatcatag 208  Q
      ||||||| | ||||||||| || |||||||||||| |   |||  || | |||||||||||||||| | |||||||| |||||||||| || || |      
T  18075555 tgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacata-tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgc 18075457  T
Q  209 atatcaatcttactcacagtgttttct 235  Q
    |||||||||||||||||||||||||||    
T  18075456 atatcaatcttactcacagtgttttct 18075430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 18653834 - 18653885
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaagataaaa 68  Q
    |||||| ||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  18653834 aattcagatatatcatctcaattttacttgttcccttttaacagagaaaaaa 18653885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18677916 - 18677958
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaaca 59  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  18677916 aattcagatatatcatctcaattttacttgttcccttttaaca 18677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18687970 - 18688012
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaaca 59  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  18687970 aattcagatatatcatctcaattttacttgttcccttttaaca 18688012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18722430 - 18722472
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaaca 59  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  18722430 aattcagatatatcatctcaattttacttgttcccttttaaca 18722472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18729852 - 18729894
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaaca 59  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  18729852 aattcagatatatcatctcaattttacttgttcccttttaaca 18729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 17991504 - 17991586
Alignment:
Q  17 aattcatatatatcatttcaattttactagttcccttttaacaaagataaaagcatgaatcaacaacaataaaaataagatataga 102  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||   ||||  |||||||||| |||||| |||||||| |||||    
T  17991504 aattcgtatatatcatttcaattttactagttcccttcgaacaaa---aaaaaaatgaatcaaccacaatacaaataagaaataga 17991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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