View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_high_25 (Length: 261)
Name: NF11480_high_25
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 16675516 - 16675680
Alignment:
| Q |
1 |
ttcttctcaaaagaactacaaacattcttccaggttgggtgtattggaatgagtgtcaaatataatactattcatgatatatgtttatgtcgagaattga |
100 |
Q |
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| T |
16675516 |
ttcttctcaaaagaactacaaacattcttctaggttgggtgtattggaatgagtgtcaaatataaaactattcataatatatgtttctgtcgataattga |
16675615 |
T |
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| Q |
101 |
ttacgtcggttgtatgttatcattttttacttctaacttcggttactttttcgaagttatatttc |
165 |
Q |
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| T |
16675616 |
ttacgtcggttgtatgttatcattttttacttctaactttggttactttttcgaagttatatttc |
16675680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17742958 - 17742791
Alignment:
| Q |
1 |
ttcttctcaaaagaactacaaacattcttccaggttgggtgtattggaatgagtgtcaaata---taatactattcatgatatatgtttatgtcgagaat |
97 |
Q |
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| T |
17742958 |
ttcttctcaaaagaactacaaacattctttgaggttggatgtattggaatgagagtcaaataatataaaactattcataatacatgtttccgtcgataat |
17742859 |
T |
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| Q |
98 |
tgattacgtcggttgtatgttatcattttttacttctaacttcggttactttttcgaagttatatttc |
165 |
Q |
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| T |
17742858 |
tgtttacgtcggttttatgttatcatttttgacttctaactttggttactttttggaagttatatttc |
17742791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 17742063 - 17742007
Alignment:
| Q |
187 |
ttgatacgatgaatcctagtatatgattaaaagatttaacctgaccccatgcatagat |
244 |
Q |
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| T |
17742063 |
ttgatacgatgaatcctagtatatgattagaagatttaacctga-cccatgcatagat |
17742007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 16676499 - 16676547
Alignment:
| Q |
196 |
tgaatcctagtatatgattaaaagatttaacctgaccccatgcatagat |
244 |
Q |
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| T |
16676499 |
tgaatcctagtatatgattggaagatttaacatgaccccatacatagat |
16676547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 20149646 - 20149700
Alignment:
| Q |
187 |
ttgatacgatgaatcctagtatatgattaaaagatttaacctgaccccatgcata |
241 |
Q |
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| T |
20149646 |
ttgatatggtgaatcctagtaaatgattagaagatttaacttgaccccatacata |
20149700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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