View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_high_27 (Length: 247)
Name: NF11480_high_27
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 56029857 - 56029652
Alignment:
| Q |
17 |
atatattgcatagttatattttgaatacataggcaatattcaaacgcagcattcaattcaatacatgggaaatacataaacatgatatgatggacagagt |
116 |
Q |
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| T |
56029857 |
atatattgcatagttatattttgaatacataggcaatattcaaacgcagcattcaattcaatacatgggaaatacataaacatgatatgatggacagagt |
56029758 |
T |
|
| Q |
117 |
atcttgaattaccccaatgctaacaaagatgtataagtataagtgtataacctttcccatatatgcgattcgtttctctaatatttaaaagaattttgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56029757 |
atcttgaattaccccaatgctaacaaagatgtataagt--------ataacctttcccatatatgcgattcgtttctctaatatttaaaagaattttgta |
56029666 |
T |
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| Q |
217 |
atagagacagccct |
230 |
Q |
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|||||||||||||| |
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| T |
56029665 |
atagagacagccct |
56029652 |
T |
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