View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11480_high_3 (Length: 594)
Name: NF11480_high_3
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 38188902 - 38188341
Alignment:
| Q |
19 |
gctgttacagtagcttggctcaaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188902 |
gctgttacagtagcttggctcaaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaa |
38188803 |
T |
|
| Q |
119 |
atttgttttaccttgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188802 |
atttgttttaccttgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctata |
38188703 |
T |
|
| Q |
219 |
tcgtgctacgaggtagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188702 |
tcgtgctacgaggtagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacg |
38188603 |
T |
|
| Q |
319 |
gacagtgctctaaaatttggctggtttttcttatgctactcggcaagttttctatttatttttcatagaagtaaccattcattctgtgcttattttgcta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188602 |
gacagtgctctaaaatttggctggtttttcttatgctactcggcaagttttatatttatttttcatagaagtaaccattcattctgtgcttattttgcta |
38188503 |
T |
|
| Q |
419 |
atcggtcttatttaattttttcctattttctccaagcagttccacattatgttttgcgttttggccgcagttgcacctccaattatcttcaaaggaaaat |
518 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188502 |
atcggtcttatttaattttttactattttctccaagcagttccacattatgttttgcgttttggccgcagttgcacctccaattatcttcaaaggaaaat |
38188403 |
T |
|
| Q |
519 |
ctctcgcgtgagttttcttctaatcttttcattccttttatttaacatgccacttgatgtcc |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188402 |
ctctcgcgtgagttttcttctaatcttttcattccttttatttaacatgccacttgatgtcc |
38188341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 532
Target Start/End: Complemental strand, 16183438 - 16183351
Alignment:
| Q |
445 |
tttctccaagcagttccacattatgttttgcgttttggccgcagttgcacctccaattatcttcaaaggaaaatctctcgcgtgagtt |
532 |
Q |
| |
|
||||| ||||||||| |||||| |||||| |||| || |||||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16183438 |
tttctacaagcagttgcacattgctttttgcattttcgctgcagttgccccaccaattatcttcaaaggaaaatctctcacgtgagtt |
16183351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 16184214 - 16184128
Alignment:
| Q |
148 |
tggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtag |
234 |
Q |
| |
|
||||||||| | |||||||| | ||||| ||||| |||| | ||||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
16184214 |
tggtttcttgctattatatattttatttctggtgttccagcatcctatgtgatgtggtatcgccctctttatcgcgctatgaggtag |
16184128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 16183565 - 16183527
Alignment:
| Q |
309 |
ttacaggacggacagtgctctaaaatttggctggttttt |
347 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
16183565 |
ttacaggacggacagtgctctgaagtttggctggttttt |
16183527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University