View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_high_4 (Length: 579)
Name: NF11480_high_4
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 38919443 - 38920016
Alignment:
| Q |
1 |
aaagaaaatatagtttgcaaaatttttgttttcaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgaggctt |
100 |
Q |
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| T |
38919443 |
aaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgaggctt |
38919542 |
T |
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| Q |
101 |
tatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaaaaat |
200 |
Q |
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| T |
38919543 |
tatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaaaaat |
38919642 |
T |
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| Q |
201 |
ggaaccatcattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagcgaag |
300 |
Q |
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| T |
38919643 |
ggaaccaccattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagcgaag |
38919742 |
T |
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| Q |
301 |
caagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgatagag |
400 |
Q |
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| T |
38919743 |
caagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgatagag |
38919842 |
T |
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| Q |
401 |
tgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttggttgggggaaacctatttgggttgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38919843 |
tgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttggttgggggaaacctatttgggttgg |
38919942 |
T |
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| Q |
501 |
ttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg |
574 |
Q |
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| T |
38919943 |
ttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg |
38920016 |
T |
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