View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_11 (Length: 497)
Name: NF11480_low_11
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 16675494 - 16675168
Alignment:
| Q |
1 |
attcaaatacaaaagcaaacattaagaaggacttaattga-ttcaagagcaataaaatgggagaattaatcaattgttgtgaatttaaatgcgacatttt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16675494 |
attcaaatacaaaagcaaacattaagaaggccttaattgaattcaagagcaataaaatgggagaattaatcaattgttgtgaatttaaatgcgacatttt |
16675395 |
T |
|
| Q |
100 |
actttaaaaagtcgttgagaaattattgtcactattaatccatagttgtaaatttgtagtttctatcagataccaaatgaaagctttttacaaagtttag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16675394 |
actttaaaaagtcgttgagaaattattgtcactattaatccatagttgtaaatttgtagtttctgtcagataccaaatgaaagctttttacaaagtttag |
16675295 |
T |
|
| Q |
200 |
tagtcaagccatagccatatgcatgccttaaacatcatatggtcaatcttaagttgaatcaattatcaaaag---nnnnnnngtttaagggaactaaaat |
296 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |
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| T |
16675294 |
tagtcaggccatagccatatgcatgccctaaacatcatatggtcaatcttaggttgaatcaattatcaaaagaaaaaaagaagttaaagggaactaaaat |
16675195 |
T |
|
| Q |
297 |
gaaagtttcaatcaggtattaggttag |
323 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
16675194 |
gaaagtttcaatcaggtattaggttag |
16675168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 17742980 - 17743309
Alignment:
| Q |
1 |
attcaaatacaaaagcaaacattaagaaggacttaattga-ttcaagagcaataaaatgggagaattaatcaattgttgtgaatttaaatgcgacatttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17742980 |
attcaaatacaaaagcaaacattaagaaggccttagttgaattcaagagcaataaaaaaggagaattaatcaattgttatgaatttaaatgcgacatttt |
17743079 |
T |
|
| Q |
100 |
actttaaaaagtcgttgagaaattattgtcactattaatccatagttgtaaatttgtagtttctatcagataccaaatgaaagctttttacaaagtttag |
199 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
17743080 |
actttaaaaattcgttgagaaattgttgtcactattaatccatagttgtacatttgtagtttctatcagataccaaatggaagctttttaaaaagtttag |
17743179 |
T |
|
| Q |
200 |
tagtcaagccatagccatatgcatgccttaaacatcatatggtcaatcttaagttgaatcaattatcaaaag----nnnnnnngttt-aagggaactaaa |
294 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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|
| T |
17743180 |
tagtcaggccatagccatatgcatgccctaaacatcatatggtcaatcttaagttgaatcaatcatcaaaagaaaaaaaaaaagtttaaagggaactaaa |
17743279 |
T |
|
| Q |
295 |
atgaaagtttcaatcaggtattaggttaga |
324 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
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|
| T |
17743280 |
atgaaagtttcaatcagttattaggttaga |
17743309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 184 - 421
Target Start/End: Complemental strand, 20149234 - 20148994
Alignment:
| Q |
184 |
tttttacaaagtttagtagtcaagccatagccatatgcatgccttaaacatcatatggtcaatctta--agttgaatcaattatcaaaagnnnnnnn-gt |
280 |
Q |
| |
|
|||||| |||||||| |||||| | ||||| ||||||| | || ||||||||||||||||||||||| ||||||||||||||||||| | || |
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|
| T |
20149234 |
tttttaaaaagtttattagtcaggtcataggcatatgcttaccctaaacatcatatggtcaatcttatcagttgaatcaattatcaaatgaaaaaaaagt |
20149135 |
T |
|
| Q |
281 |
ttaagggaactaaaatgaaagtttcaatcaggtattaggttagaaaaagtaacacttaaaatagttttgcactgcccaataagatatctacgtagtatat |
380 |
Q |
| |
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| || ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || | | |||||||||||||| ||||| || |
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|
| T |
20149134 |
taaatggaacgaaaatgaaagtttcaatcaggtattaggttagagaaagtaacatttaaaatagttttacagtagctaataagatatctacatagtacat |
20149035 |
T |
|
| Q |
381 |
gtctatgcaagttaaaggccacaaacctcgtaaaagtcata |
421 |
Q |
| |
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||| ||||||| |||||||||| |||||||||| |||| |
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|
| T |
20149034 |
acctaagcaagttgaaggccacaactctcgtaaaagacata |
20148994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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