View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_16 (Length: 357)
Name: NF11480_low_16
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 32911683 - 32911355
Alignment:
| Q |
15 |
atgaatataaacaataaaaatgaaattctttagttctatatttgtcatacccagagataagaaccttcttgggttccatcaataatagaaactgcatcag |
114 |
Q |
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| T |
32911683 |
atgaatataaacaataaaaattaaattctttagttctatatttgtcatacccagagataagaaccttcttgggttccatcaataatagaaactgcatcag |
32911584 |
T |
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| Q |
115 |
gttgaacattgaaggtacttctattgctgaacatatcccttacctaaggtaattaattaagaacacaaaattaagctctaattaaagcatggaaagttta |
214 |
Q |
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| T |
32911583 |
gttgaacattgaaggtacttctattgctgaacatatcccttacctaaggtaattaattaagaacacaaaattaagctctaatttaagcatggaaagttta |
32911484 |
T |
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| Q |
215 |
gatctaactgctaattataatattgaaacataaaataacaaaattaaactaataattaccgcttgcaatatcttttcagaagcatccccattcaaaagcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32911483 |
gatctaactgctaattataatattgaaacataaaataacaaaattaaactaataattaccgcttgcaatatcttttcagaagcatccccattcaaaagcc |
32911384 |
T |
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| Q |
315 |
ttaaacctgcggttgcctgcaataatatt |
343 |
Q |
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| T |
32911383 |
ttaaacctgcggttgcctgcaataatatt |
32911355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 32923493 - 32923360
Alignment:
| Q |
58 |
gtcatacccagagataagaaccttcttgggttccatcaataatagaaactgcatcaggttgaacattgaaggtacttctattgctgaacatatcccttac |
157 |
Q |
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| T |
32923493 |
gtcatacccagagataagaaccttcttgggttccatcaataatagaaactgcatcaggttgaacattgaaggtacttctattgctgaacaaatcccttac |
32923394 |
T |
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| Q |
158 |
ctaaggtaattaattaagaacacaaaattaagct |
191 |
Q |
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| T |
32923393 |
ctaaggtaattaaatgggagcacgaaattaagct |
32923360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 32923320 - 32923223
Alignment:
| Q |
248 |
aataacaaaattaaactaataattaccgcttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgcaataatatttg |
345 |
Q |
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| T |
32923320 |
aataacaaaattaaacttatggttaccgattgcagtattttttcagaagcatccccattcaaaagccttaaacctgctgttgcctgcataaatatttg |
32923223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 32934142 - 32934077
Alignment:
| Q |
270 |
ttaccgcttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
335 |
Q |
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| T |
32934142 |
ttaccgcttgcaatatcttttcggcagcatccccattcaaaagcctcaaacctgcggttgcctgca |
32934077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 32934331 - 32934238
Alignment:
| Q |
62 |
tacccagagataagaaccttcttgggttccatcaataatagaaactgcatcaggttgaacattgaaggtacttctattgctgaacatatccctt |
155 |
Q |
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|||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || |||||||||| |||| |
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| T |
32934331 |
tacccacatataagaaccttcttgggttccatctataatagaaactgcatcactttgaacgttgagggtacttctgttactgaacatattcctt |
32934238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 32898101 - 32898031
Alignment:
| Q |
265 |
aataattaccgcttgcaatatcttttcagaagcatccccattcaaaagccttaaacctgcggttgcctgca |
335 |
Q |
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|||| |||||||| ||||||||| ||||| |||||||| | |||| |||||||||||| |||||||||| |
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| T |
32898101 |
aatagttaccgctctcaatatcttatcagatgcatccccttccaaagcccttaaacctgcagttgcctgca |
32898031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 11823707 - 11823595
Alignment:
| Q |
58 |
gtcatacccagagataagaaccttcttgggttccatcaataatagaaactgcatcaggttgaacattgaaggtacttctattgctgaacatatcccttac |
157 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
11823707 |
gtcatacccatagataagaaccttcttgggttccatcaataatagaaactgcatcaggttgaacattgaaggtacttctgttgctcaacaaatcccttac |
11823608 |
T |
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| Q |
158 |
ctaaggtaattaa |
170 |
Q |
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| T |
11823607 |
ctaaggtaattaa |
11823595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 11823533 - 11823436
Alignment:
| Q |
248 |
aataacaaaattaaactaataattaccgcttgcaatatcttttcagaagcat-ccccattcaaaagccttaaacctgcggttgcctgcaataatattt |
344 |
Q |
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||||||||||||||||| || |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
11823533 |
aataacaaaattaaacttatggttaccgattgcagtatcttttcagaagcatcccccattcaaaagccttaaacctgctgttgcctgcataaatattt |
11823436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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