View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_23 (Length: 285)
Name: NF11480_low_23
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_23 |
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| [»] scaffold1173 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 45036088 - 45035930
Alignment:
| Q |
19 |
atgctaagattgtatttgtaatattgttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagta |
118 |
Q |
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| T |
45036088 |
atgctaagattgtatttgtaatattgttgcaggggttgaatcagtttcaatagacatgaaagacaagaaaatgaccttaataggagatattgatccaata |
45035989 |
T |
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| Q |
119 |
cgtgtagtggctaagctaaggaagttatgtcatgcagaaatactttcagttggaccagc |
177 |
Q |
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| T |
45035988 |
cgtgtagtggctaagttaaggaagttatgtcatgcagaaatactttcagttggaccagc |
45035930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 45041345 - 45041193
Alignment:
| Q |
25 |
agattgtatttgtaatattgttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagtacgtgta |
124 |
Q |
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| T |
45041345 |
agattgtatttgtaatattgttgcaggggttgagtcagtttcaatagacatgaaagacaagaaaatgaccttaataggagatattgatccagtacgtgta |
45041246 |
T |
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| Q |
125 |
gtggctaagctaaggaagttatgtcatgcagaaatactttcagttggaccagc |
177 |
Q |
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| T |
45041245 |
gtggctaagctaaggaagatttgttatgctgaaatactttcagttggaccagc |
45041193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 45043402 - 45043254
Alignment:
| Q |
25 |
agattgtatttgtaatattgttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagtacgtgta |
124 |
Q |
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| T |
45043402 |
agattgtattt-taataattttgcaggggttgagtcagttgaagtagaca---aagacaagaaaatgaccttagtaggagataccgacccagtacttgta |
45043307 |
T |
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| Q |
125 |
gtggctaagctaaggaagttatgtcatgcagaaatactttcagttggaccagc |
177 |
Q |
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| T |
45043306 |
gtggctaagctaagaaagttatgtcatgctgaaatactttcagttggaccagc |
45043254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 46175517 - 46175367
Alignment:
| Q |
22 |
ctaagattgtatttgtaatattgttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagtacgt |
121 |
Q |
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| T |
46175517 |
ctaagactgtattt-taataattttgcaggggttgagtcagttgaagtagaca---aagacaagaaaatgaccttagtaggagataccgacccagtactt |
46175422 |
T |
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| Q |
122 |
gtagtggctaagctaaggaagttatgtcatgcagaaatactttcagttggaccag |
176 |
Q |
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| T |
46175421 |
atagtggctaagctaagaaagttatgtcatgcagaaatactttcggttggaccag |
46175367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 272
Target Start/End: Complemental strand, 45035865 - 45035835
Alignment:
| Q |
242 |
tcaacaatgataattaatcctttcatgctct |
272 |
Q |
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| T |
45035865 |
tcaacaatgataattaatcctttcatgctct |
45035835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 17995860 - 17995958
Alignment:
| Q |
62 |
gtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagtacgtgtagtggctaagctaaggaagttatgtcatgcagaaata |
160 |
Q |
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| T |
17995860 |
gtttcaatcgacatgaaggataagaaaatgacattaattggagacatggatcctgttagtgttgtgtcgaagttaaggaaattgtgtcatgctgaaata |
17995958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 17854427 - 17854496
Alignment:
| Q |
45 |
ttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatcc |
114 |
Q |
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| T |
17854427 |
ttgcaggggttgaatcagtatcaatagacactaatgagaagaaattgacgttaacaggggatgttgatcc |
17854496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 17872330 - 17872249
Alignment:
| Q |
45 |
ttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagtacgtgtagt |
126 |
Q |
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| T |
17872330 |
ttgcaggggtagaatcagtttctgtggacatgaaagacaagaaattaaccttaactggagacacagatccagtacatgtagt |
17872249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 1912 - 1985
Alignment:
| Q |
45 |
ttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatccagta |
118 |
Q |
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| T |
1912 |
ttgcaggggttgaatcagtagcaatagactcgaaagagaagaaattgacattatcgggggatattgatccagta |
1985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 17192880 - 17192811
Alignment:
| Q |
45 |
ttgcaggggttgaatcagtttcaatagacatgaaagataagaaaatgaccttaataggagatattgatcc |
114 |
Q |
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| T |
17192880 |
ttgcaggggttgaatcagtatcaatagactggaaagagaagaaattgacaatatcaggggatattgatcc |
17192811 |
T |
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