View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_25 (Length: 265)
Name: NF11480_low_25
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 56457715 - 56457834
Alignment:
| Q |
131 |
gaagatttgatttgattgagagttaaagaaagtaataataagaaccaaaataggatgtccaatgagggtattcaagacagcagattttccagcaccctga |
230 |
Q |
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| T |
56457715 |
gaagatttgatttgattgagagttaaagaaagtaataataagaaccaaaataggatgtccaatgagggtattcaagacagcagattttccagcaccctga |
56457814 |
T |
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| Q |
231 |
aggatcacattacaattaca |
250 |
Q |
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| T |
56457815 |
aggatcacattacaattaca |
56457834 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 56457580 - 56457670
Alignment:
| Q |
1 |
tttgaggttaaagatgcgtctctgttcaattcaatgttaatgggagcccttgtggcaccattttgacctgtgggctgcagcagtagtagca |
91 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56457580 |
tttgaggttaaagatgtgtctctgttcaattcaatgttaatgggagcccttgtggcaccattttgacctgtgggctgcagcagtagtagca |
56457670 |
T |
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