View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_27 (Length: 248)
Name: NF11480_low_27
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 45035650 - 45035449
Alignment:
| Q |
35 |
atgagttgtaaaagtagtctgatgtacagtgttggttataatacgaggtttgcgagactattcttcatatagcacattcttgaccaatatgatattctaa |
134 |
Q |
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| T |
45035650 |
atgagttgtaaaagtagtctgatgtacagtgttggttataatacgaggtttgtgagtctattcttcatatagcacattcctgaccaatatgatattctaa |
45035551 |
T |
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| Q |
135 |
acttacacttcaattctcttgaataatttcttttgacaataacactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttctgt |
234 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45035550 |
acttacacttcaattctctcgaataatttcttttgacaatagtactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttatgt |
45035451 |
T |
|
| Q |
235 |
gc |
236 |
Q |
| |
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|| |
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| T |
45035450 |
gc |
45035449 |
T |
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