View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_29 (Length: 240)
Name: NF11480_low_29
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 36718554 - 36718397
Alignment:
| Q |
14 |
agagattgaaggttattgaataaaattgaacaataagaaaatgatttggcatttttgtgtcttcacaagaaaaggtttgaaagaggagagaagattgagc |
113 |
Q |
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| T |
36718554 |
agagattgaaggttattgaataaaattgaacaataagaaaatgatttggcatttttgtgtcttcacaagaaaaggtttgaaagaggagagaagattgagc |
36718455 |
T |
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| Q |
114 |
tgcatcaattatttgcttttgtataaattactaccaatgttaagtggagttcataaga |
171 |
Q |
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| T |
36718454 |
tgcatcaattatttgcttttgtataaattactaccaatgtcaagtaaagttcataaga |
36718397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 9453484 - 9453664
Alignment:
| Q |
14 |
agagattgaaggttattgaataaaattgaacaataagaaaatgatttggcatttttgtgtcttcacaagaaaaggtttgaaagaggagagaagattgagc |
113 |
Q |
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|||| ||||||||||| ||| |||||||||||||||||| | | ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| |
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| T |
9453484 |
agaggttgaaggttatggaacaaaattgaacaataagaagagggtttggaatttttgtat-ttcacaagagaaggtttgaaagaggagagaagattgagc |
9453582 |
T |
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| Q |
114 |
tgcatcaattatttgcttttgtataaattactaccaatgttaagtggagttcataagaatcaagcatattttgtaccaaaaaga |
197 |
Q |
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| T |
9453583 |
tacatcaattattttcttt--tctaaattactaccaatattaagtagagttaataagaatcaaacatattctgtactaaaaaga |
9453664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 34716815 - 34716699
Alignment:
| Q |
58 |
tttggcatttttgtgtcttcacaagaaaaggtttgaaagaggagagaagattgagctgcatcaattatttgcttttgtataa---attactaccaatgtt |
154 |
Q |
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| T |
34716815 |
tttggcatttttgtgtcttgacaagagaaggtttgacagaggagacgagattgagctccatcaattatttgcttttgtataaattattactaccaatatt |
34716716 |
T |
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| Q |
155 |
aagtggagttcataaga |
171 |
Q |
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| T |
34716715 |
aaatagggttcataaga |
34716699 |
T |
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