View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_3 (Length: 634)
Name: NF11480_low_3
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 622
Target Start/End: Original strand, 37497227 - 37497818
Alignment:
| Q |
19 |
cactacactcttcctcttgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgc |
118 |
Q |
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| T |
37497227 |
cactacactcttcctcttgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgc |
37497326 |
T |
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| Q |
119 |
ttctattcttctatgattttccataacttgttaatttagtagttaatgttatgctaaagtttcnnnnnnn-ggtgttttacttatctgggttgtgttcat |
217 |
Q |
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| T |
37497327 |
ttctattcttctatgattttccataacttgttaatttagtagttaatgttatgctaaagtttcttttttttggtgttttacttatctgggttgtgttcat |
37497426 |
T |
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| Q |
218 |
ttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgtactcttggttatatacactggctcagtctgnnnnnnncttggtctttga |
317 |
Q |
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| T |
37497427 |
ttgcagggaaagttgatggaggatcaagaacaaaggaagaagagaaagtgtactcttggttatatacactggctcagtctgaaaaaaacttggtctttga |
37497526 |
T |
|
| Q |
318 |
gtatgttagatccactgaaagaggcaagtatctgcattctacaatactactttatcaatgaactttgattttataattatcattctttaatttttacacc |
417 |
Q |
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| T |
37497527 |
gtatgttagatccactgaaagaggcaattatctgcattctacaatactactttatcaatgaactttgattttataattatcattctttaatttt------ |
37497620 |
T |
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| Q |
418 |
ctctccctacacccaataaaaataactccnnnnnnncaattgtatactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgcct |
517 |
Q |
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||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497621 |
-------tacacccaataaagataacttctttttttcaattgtatactgaaattaaattatggacaaaaaatgtgtcttgaatgcatgttttttgtgccg |
37497713 |
T |
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| Q |
518 |
cttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497714 |
cttgcgctatgcaaactgtaactactgtgcaaatttttcataaaagaaatttggagggagaaaattgatactagggctcaactaagattttcattgtggt |
37497813 |
T |
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