View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_34 (Length: 201)
Name: NF11480_low_34
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_34 |
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| [»] scaffold0101 (1 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 38402903 - 38403018
Alignment:
| Q |
12 |
tgagatgaacatgagcatgccatttgaaaattgtcttttgaattatgtgtgtgt--aatacgggggcatatcaagtgggattgatatctttatgtgagaa |
109 |
Q |
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| T |
38402903 |
tgagatgaacatgagcatgccatttgaaaattgtcttttgaattgtgtgtgtgtgtaatacgggg-catatcaagtgggattgatatctttatgtgagaa |
38403001 |
T |
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| Q |
110 |
caatataaataaatggt |
126 |
Q |
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| T |
38403002 |
caatataaataaatggt |
38403018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 38403551 - 38403463
Alignment:
| Q |
94 |
tatctttatgtgagaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatggagtcatgt |
182 |
Q |
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| T |
38403551 |
tatctttatgagagaacaataggaataaatggtagccctcatattaaaaggaatcagcgagattaaaacatgatttaagtgagtcatgt |
38403463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 38393618 - 38393530
Alignment:
| Q |
94 |
tatctttatgtgagaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatggagtcatgt |
182 |
Q |
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| T |
38393618 |
tatctttatgcgagaataataagaaaatattgtagctctcatattaaaagaaagggttgagattaaaacatgacttaagtgagtcatgt |
38393530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 38403018 - 38403050
Alignment:
| Q |
151 |
tgatattaaaacatgacttaatggagtcatgtg |
183 |
Q |
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| T |
38403018 |
tgatattaaaacatgacttaatggagtcatgtg |
38403050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 4801946 - 4802007
Alignment:
| Q |
116 |
aaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatggagt |
177 |
Q |
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| T |
4801946 |
aaataaatggtatccctcatattaaaagaaatggttgagattaaaacatgacttaagggagt |
4802007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 18096755 - 18096845
Alignment:
| Q |
91 |
tgatatctttatgtgagaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatggagtcatg |
181 |
Q |
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| T |
18096755 |
tgatatcttaatgtgagaataatagaaataaatggtaacccttatattaaaaggaatggtggagattaaaacctgacttaagtgagtcatg |
18096845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 18097452 - 18097404
Alignment:
| Q |
136 |
attaaaagaaatgattgatattaaaacatgacttaatggagtcatgtgt |
184 |
Q |
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| T |
18097452 |
attaaaaggaatgattgagattaaaacatgacttaagtgagtcatgtgt |
18097404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 43515 - 43621
Alignment:
| Q |
76 |
catatcaagtgggattgatatctttatgtgagaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatgga |
175 |
Q |
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| T |
43515 |
catatcatgtgagaatgttatctttatatgagaatgatatgaataaattgtagcccttgtattaaaattaatg--tgatattaaaacatgacttgagtga |
43612 |
T |
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| Q |
176 |
gtcatgtgt |
184 |
Q |
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| T |
43613 |
gtcatgtgt |
43621 |
T |
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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 77816 - 77732
Alignment:
| Q |
96 |
tctttatgtgagaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaatggagtcat |
180 |
Q |
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| T |
77816 |
tctttatttgagaacaataataataaatggtagcccttagattaaaatgaatgattgatgttaatacatcacttaaatgagtcat |
77732 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 48350294 - 48350230
Alignment:
| Q |
107 |
gaacaatataaataaatggtagccctcgtattaaaagaaatgattgatattaaaacatgacttaa |
171 |
Q |
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| T |
48350294 |
gaacgatatgaataaatggtagttctcatattaaaaggaacgattgcgattaaaacatgacttaa |
48350230 |
T |
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