View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_7 (Length: 528)
Name: NF11480_low_7
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 14170545 - 14170035
Alignment:
| Q |
11 |
cagagacaataattggaccaattcatgaattgatagatgaagaacaccctcccaagtacagaaattatcatttctctaagtttcttgaagaattcttcaa |
110 |
Q |
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| T |
14170545 |
cagagacaataattggaccaattcatgaattgatagatgaagaacaccctcccaagtacagaaattatcatttctctaagtttcttgaagaattcttcaa |
14170446 |
T |
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| Q |
111 |
ccaagaaggaacaaggaggatggtgaaagaagtctttgagttgccatgt------------aatgtagtttaatttgtatgcaatgatcaaatttaatca |
198 |
Q |
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| T |
14170445 |
ccaagaaggaacaaggaggattgtgaaagaagtctttgagttgccatgttagaaaataaataatgtagtttaatttttatgcaatgatcaaatttaatca |
14170346 |
T |
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| Q |
199 |
tttaaattttataatgttattttctaaaaatcatttggatatgtgtaaaattgtactatgattgcnnnnnnnttaaattcaaattaatgcttgattttca |
298 |
Q |
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| T |
14170345 |
tttaaattttataatgttattttctaaaa-tcatttggatatgtgcaaaattgtactatgattgcaaaaaaattaaattcaaattaatgcttgattttca |
14170247 |
T |
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| Q |
299 |
taatgtatctactacttgtagatattattaaaccgtaatgataagtgagagtatatagattacttttggaggaagttagttaacaaactaactacttgta |
398 |
Q |
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| T |
14170246 |
taatgtatctactacttgtagatattattaaaccgtaatgataagtgagagtatatagattacttttggaggaagttagttaacaaactaactacttgta |
14170147 |
T |
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| Q |
399 |
accatttttcaactagagttagttgtgagttgatgacaccgaagatcaactgatttggaagcatatttctaatggaaagctaaccttaaaagatgcatat |
498 |
Q |
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| T |
14170146 |
accatttttcaactagagttagttgtgagttgatgacactgaagatcaactgatttggaagcatgtttctaatggaaagctaaccttaaaagatgcatat |
14170047 |
T |
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| Q |
499 |
tctttcaagaaa |
510 |
Q |
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| T |
14170046 |
tctttcaagaaa |
14170035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 14174282 - 14174137
Alignment:
| Q |
11 |
cagagacaataattggaccaattcatgaattgatagatgaagaacaccctcccaagtacagaaattatcatttctctaagtttcttgaagaattcttcaa |
110 |
Q |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
14174282 |
cagagacaataattgagccaattcatgaattaatagatgatgaacaccctcccaagtacagaagttatcgtttctctaagtttcttgaagaagtcttcaa |
14174183 |
T |
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| Q |
111 |
ccaagaaggaacaaggaggatggtgaaagaagtctttgagttgcca |
156 |
Q |
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| T |
14174182 |
ccataaaggaacaaggaggatcgtgaaagaaacctttgagttgcca |
14174137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14177499 - 14177439
Alignment:
| Q |
19 |
ataattggaccaattcatgaattgatagatgaagaacaccctcccaagtacagaaattatc |
79 |
Q |
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| T |
14177499 |
ataattggtcctattcaggaattgatagatgaagaacaccctcaaaagtatagaaattatc |
14177439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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