View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11480_low_8 (Length: 525)
Name: NF11480_low_8
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11480_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 525
Target Start/End: Complemental strand, 16910985 - 16910470
Alignment:
| Q |
10 |
gcagagacttggtgaacgagaccacgtgttagagatatagaattaaggtttggagtagaaagcacaactttgtaacgttccggagcggtaaaacctatgg |
109 |
Q |
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| T |
16910985 |
gcagagaattgatgaacgagaccacgaaagagagagatagaattaaggtttggagtagaaagcacaactttgtaacgttccggaggggtacaacctatgc |
16910886 |
T |
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| Q |
110 |
acaaactatatagcttggaattagatatgcagaggacagttgcattgtgttgtagacaccaacagtcaagaaccaaggtgcttaacatcttaaaatttga |
209 |
Q |
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| T |
16910885 |
acaaactagatagcttggaattagatatgcagaggacagttgcattgtgttgtagagaccaacagttaaggaccaaagtgcttaacatcttaaaatttga |
16910786 |
T |
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| Q |
210 |
aaagggttccacaatgccattatcatttgcaacaaaagtgacagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatc |
309 |
Q |
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| T |
16910785 |
aaagggttccacaatgccattgtcatttgcaacaaaagtggcagagataagatgcaagcttttcaaagcaggcaattccaaggaagttggaattttcatc |
16910686 |
T |
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| Q |
310 |
atccaacggacaccccaaaataaaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaa |
409 |
Q |
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| T |
16910685 |
atccaagggacaccccaaaataaaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaagtgtaaccgggtttgaaattcaaataaa |
16910586 |
T |
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| Q |
410 |
gttcaagagtgaaattctcgacattatgtgacatcgcatatttcatgaccatgtccacaagttcaggttcaacgcctccttcatttcttaaaacaatatc |
509 |
Q |
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| T |
16910585 |
gttcaagtgtgaaattctcgacattatgtgacatagcatatttcatgaccgcgtccacaagtttaggttcaacgcctctttcatttcttaaaacaatatc |
16910486 |
T |
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| Q |
510 |
ttgtaaagaaattgat |
525 |
Q |
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| T |
16910485 |
ttgtaaagaaattgat |
16910470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 425
Target Start/End: Original strand, 50790290 - 50790383
Alignment:
| Q |
332 |
aaagctttagatgtgtcaaagatttgcaagaaaagatgctagggcgcaaaatgtaaccgggtttgaaattcaaataaagttcaagagtgaaatt |
425 |
Q |
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||||||| ||| ||||||||||| |||||||||||||||||| |||| |||||||| | || |||||| ||| || ||||||||| ||||| |
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| T |
50790290 |
aaagcttaagacatgtcaaagattgacaagaaaagatgctagggtgcaatgtgtaaccgcgcttaaaattcgaatcaacttcaagagttaaatt |
50790383 |
T |
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