View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11480_low_9 (Length: 515)

Name: NF11480_low_9
Description: NF11480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11480_low_9
NF11480_low_9
[»] chr4 (31 HSPs)
chr4 (180-505)||(5162689-5163015)
chr4 (180-503)||(5184521-5184838)
chr4 (17-152)||(5184359-5184493)
chr4 (30-152)||(5162540-5162661)
chr4 (306-403)||(55264632-55264729)
chr4 (328-470)||(53924391-53924530)
chr4 (306-401)||(55264380-55264474)
chr4 (323-437)||(54090992-54091106)
chr4 (328-401)||(40942585-40942658)
chr4 (324-464)||(54458706-54458846)
chr4 (324-403)||(33614384-33614463)
chr4 (324-403)||(39051328-39051406)
chr4 (306-397)||(44137371-44137462)
chr4 (329-403)||(11383032-11383105)
chr4 (326-403)||(40942675-40942752)
chr4 (309-401)||(13432756-13432847)
chr4 (306-401)||(13302119-13302213)
chr4 (322-401)||(25500468-25500546)
chr4 (328-375)||(45921893-45921940)
chr4 (356-471)||(49448188-49448303)
chr4 (30-144)||(5138715-5138828)
chr4 (306-403)||(7403260-7403357)
chr4 (326-386)||(3465389-3465449)
chr4 (324-396)||(39493771-39493843)
chr4 (324-403)||(13119381-13119460)
chr4 (326-381)||(39051105-39051160)
chr4 (420-471)||(45921830-45921881)
chr4 (306-401)||(55284053-55284148)
chr4 (313-403)||(54458602-54458692)
chr4 (363-403)||(13119230-13119270)
chr4 (318-394)||(56087588-56087664)
[»] chr5 (21 HSPs)
chr5 (324-401)||(36184738-36184815)
chr5 (320-401)||(11275790-11275871)
chr5 (346-403)||(31065868-31065925)
chr5 (330-403)||(36184522-36184595)
chr5 (309-397)||(20399012-20399100)
chr5 (328-403)||(5971891-5971966)
chr5 (318-403)||(9637755-9637837)
chr5 (332-377)||(987328-987373)
chr5 (312-401)||(31046143-31046231)
chr5 (328-401)||(33676544-33676617)
chr5 (340-403)||(8285238-8285301)
chr5 (324-403)||(33391514-33391593)
chr5 (325-438)||(11275659-11275772)
chr5 (312-401)||(31051204-31051292)
chr5 (359-403)||(4902220-4902264)
chr5 (341-397)||(27354306-27354362)
chr5 (318-401)||(8840022-8840105)
chr5 (388-471)||(9900261-9900344)
chr5 (324-397)||(31066088-31066161)
chr5 (320-353)||(32508922-32508955)
chr5 (306-370)||(12640244-12640308)
[»] chr7 (15 HSPs)
chr7 (312-403)||(42709905-42709996)
chr7 (326-471)||(30935271-30935416)
chr7 (342-401)||(21248998-21249057)
chr7 (334-401)||(26752017-26752084)
chr7 (306-403)||(41008922-41009019)
chr7 (324-403)||(12427833-12427912)
chr7 (326-470)||(10524976-10525114)
chr7 (324-403)||(3248320-3248399)
chr7 (326-437)||(16830294-16830405)
chr7 (326-402)||(36478535-36478611)
chr7 (309-396)||(3248445-3248532)
chr7 (312-403)||(35660967-35661058)
chr7 (325-371)||(16810449-16810495)
chr7 (343-403)||(6026-6086)
chr7 (339-367)||(39392564-39392592)
[»] chr1 (25 HSPs)
chr1 (324-471)||(6219625-6219772)
chr1 (326-403)||(38783894-38783971)
chr1 (313-403)||(10595501-10595591)
chr1 (306-403)||(10377546-10377643)
chr1 (324-397)||(28504711-28504784)
chr1 (324-371)||(8792967-8793014)
chr1 (306-400)||(46410826-46410920)
chr1 (327-403)||(27293283-27293359)
chr1 (322-381)||(6219772-6219831)
chr1 (306-401)||(34835720-34835815)
chr1 (329-403)||(34835593-34835667)
chr1 (344-401)||(7790300-7790357)
chr1 (340-397)||(15395209-15395266)
chr1 (326-403)||(27562671-27562748)
chr1 (334-406)||(50147230-50147302)
chr1 (309-403)||(23399510-23399607)
chr1 (326-389)||(27293426-27293489)
chr1 (325-371)||(6061613-6061659)
chr1 (359-401)||(15395431-15395473)
chr1 (309-371)||(40650043-40650104)
chr1 (306-355)||(844627-844676)
chr1 (342-403)||(4066923-4066984)
chr1 (330-403)||(7790411-7790483)
chr1 (313-398)||(38576563-38576648)
chr1 (318-401)||(46410638-46410722)
[»] chr6 (14 HSPs)
chr6 (324-387)||(9530547-9530610)
chr6 (324-403)||(19121854-19121933)
chr6 (306-403)||(3960852-3960949)
chr6 (306-381)||(21394236-21394311)
chr6 (324-465)||(3889971-3890113)
chr6 (324-376)||(30747944-30747996)
chr6 (324-435)||(3960721-3960832)
chr6 (326-403)||(19121985-19122062)
chr6 (324-403)||(21394490-21394568)
chr6 (361-403)||(5656578-5656620)
chr6 (326-375)||(21969302-21969351)
chr6 (344-381)||(24794190-24794227)
chr6 (366-403)||(26330227-26330264)
chr6 (342-374)||(6782912-6782944)
[»] chr3 (19 HSPs)
chr3 (324-403)||(39840659-39840738)
chr3 (306-403)||(55447182-55447279)
chr3 (306-396)||(16298174-16298264)
chr3 (323-397)||(33075275-33075349)
chr3 (312-403)||(45965804-45965895)
chr3 (325-403)||(40472831-40472909)
chr3 (324-401)||(20124246-20124322)
chr3 (306-471)||(29504832-29504997)
chr3 (326-403)||(39840892-39840969)
chr3 (326-401)||(33429121-33429196)
chr3 (330-396)||(1431476-1431542)
chr3 (323-380)||(27812204-27812261)
chr3 (324-401)||(42045771-42045848)
chr3 (329-401)||(29504774-29504846)
chr3 (325-381)||(40860973-40861029)
chr3 (337-401)||(41709291-41709355)
chr3 (326-397)||(31300371-31300442)
chr3 (338-380)||(3910245-3910287)
chr3 (323-397)||(45965672-45965746)
[»] scaffold0137 (1 HSPs)
scaffold0137 (318-403)||(17094-17179)
[»] chr8 (15 HSPs)
chr8 (326-470)||(33229497-33229635)
chr8 (307-401)||(10028876-10028970)
chr8 (306-403)||(10028633-10028730)
chr8 (318-403)||(10028737-10028822)
chr8 (323-381)||(5840352-5840410)
chr8 (328-403)||(29490376-29490451)
chr8 (340-390)||(23768775-23768825)
chr8 (357-403)||(33229620-33229666)
chr8 (324-401)||(21136587-21136664)
chr8 (328-471)||(21136650-21136793)
chr8 (344-403)||(29490606-29490665)
chr8 (326-380)||(41424410-41424464)
chr8 (325-406)||(5840961-5841042)
chr8 (342-403)||(32029639-32029700)
chr8 (322-402)||(23961644-23961724)
[»] chr2 (18 HSPs)
chr2 (306-403)||(17658758-17658855)
chr2 (323-470)||(6511016-6511163)
chr2 (332-403)||(22191390-22191461)
chr2 (306-390)||(22191527-22191611)
chr2 (306-397)||(32013984-32014075)
chr2 (328-403)||(32503046-32503121)
chr2 (328-403)||(33940037-33940112)
chr2 (306-381)||(17672926-17673001)
chr2 (306-369)||(35736709-35736772)
chr2 (322-368)||(18561610-18561656)
chr2 (328-380)||(2451166-2451218)
chr2 (324-403)||(6511148-6511225)
chr2 (306-381)||(17627854-17627929)
chr2 (329-380)||(41440020-41440071)
chr2 (346-403)||(8033878-8033935)
chr2 (306-403)||(8257561-8257658)
chr2 (312-381)||(17184764-17184833)
chr2 (319-403)||(32502807-32502891)
[»] scaffold0022 (2 HSPs)
scaffold0022 (309-397)||(122547-122635)
scaffold0022 (313-403)||(62678-62768)
[»] scaffold0198 (2 HSPs)
scaffold0198 (306-372)||(11907-11973)
scaffold0198 (320-372)||(11542-11594)
[»] scaffold0528 (1 HSPs)
scaffold0528 (312-401)||(1649-1737)
[»] scaffold0252 (1 HSPs)
scaffold0252 (355-403)||(19789-19837)
[»] scaffold0154 (1 HSPs)
scaffold0154 (312-403)||(6220-6311)
[»] scaffold0066 (1 HSPs)
scaffold0066 (328-403)||(11992-12067)
[»] scaffold0340 (2 HSPs)
scaffold0340 (326-403)||(10875-10952)
scaffold0340 (324-401)||(11006-11083)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 180 - 505
Target Start/End: Original strand, 5162689 - 5163015
Alignment:
Q  180 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162689 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 5162788  T
Q  280 ttttcttttgttaataat-aattcttcaaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaatta 378  Q
    ||||||||||| | |||| ||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  5162789 ttttcttttgtcattaattaattcttcaaccaccaaatcgggtcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaatta 5162888  T
Q  379 gtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaagtgctttt 478  Q
    ||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5162889 gtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgctttt 5162988  T
Q  479 gtaagtaattcattatgagaccctatg 505  Q
    |||||||||||||||||||||||||||    
T  5162989 gtaagtaattcattatgagaccctatg 5163015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 180 - 503
Target Start/End: Original strand, 5184521 - 5184838
Alignment:
Q  180 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184521 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 5184620  T
Q  280 ttttcttttgttaataataattcttcaaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattag 379  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||    |||| ||  ||||||||| || |||||| ||||||||||| ||||||     
T  5184621 ttttcttttgtcaataataattcttcaagcaccaaatcggtccatgtc----taagcca--ctcaaattaatcactaactctattaatatttcaaattat 5184714  T
Q  380 tcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaagtgcttttg 479  Q
    ||| | | ||| ||||||||||||||||||||| | ||||||||||||||||||||||| | ||||  |||||| |||||||||| || |||||||||||    
T  5184715 tcattttttttatcaaaagtttctgaaccagatccttcgacatgtgacaaaaacataaagaaaaggttctaattgacaaacttttgactaagtgcttttg 5184814  T
Q  480 taagtaattcattatgagacccta 503  Q
    ||||||||||||||||||||||||    
T  5184815 taagtaattcattatgagacccta 5184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 5184359 - 5184493
Alignment:
Q  17 attatttttgaagatccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgaagtatggaattcctctggattttctgcagccat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   | |  ||  ||      | ||||||||    
T  5184359 attatttttgaagatccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgca-gccattgacccggcagcagccat 5184457  T
Q  117 tgattctgtgacaggccctatgctagagtattattg 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  5184458 tgattctgtgacaggccctatgctagagtattattg 5184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 5162540 - 5162661
Alignment:
Q  30 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgaagtatggaattcctctggattttctgcagccattgattctgtgaca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   | |  ||  ||      | |||||||||||||||||||||    
T  5162540 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgca-gccattgacccggcagcagccattgattctgtgaca 5162638  T
Q  130 ggccctatgctagagtattattg 152  Q
    |||||||||||||||||||||||    
T  5162639 ggccctatgctagagtattattg 5162661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 55264729 - 55264632
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| | |||||||||||||  |||| |||||||||||||||||| | | ||||||||||| |||  ||||  ||||||||||||||||||||    
T  55264729 aaccaccaatttggtccatgtctttacaagtgactctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttct 55264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 470
Target Start/End: Original strand, 53924391 - 53924530
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgac 427  Q
    |||||||||||| ||||||||||| | | ||| ||||||||    ||| |||||| |||||||||||||||||||| ||  |  ||||||  ||||||||    
T  53924391 tttgtaagtcaccctcaaattagtatgtgactctattaatac---aaactagtcattgtctttgtcaaaagtttctcaattacgttcctcaccatgtgac 53924487  T
Q  428 aaaaacataaatacaaggacctaattaacaaacttttaacaaa 470  Q
    ||||||||||| |||| || |||||| | |||||||| |||||    
T  53924488 aaaaacataaagacaatgatctaattgaaaaacttttgacaaa 53924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 401
Target Start/End: Original strand, 55264380 - 55264474
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||| || ||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  55264380 aaccaccaaattggtcg-tgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagttt 55264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 437
Target Start/End: Complemental strand, 54091106 - 54090992
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 422  Q
    ||||| |||||||||| |||||||||||||  | |||  |||||||||||||| ||||   |||||||||| ||||||||| ||  || | ||||| |||    
T  54091106 atgtcgttgtaagtcattctcaaattagtcattgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctcgtcat 54091007  T
Q  423 gtgacaaaaacataa 437  Q
    |||||||||||||||    
T  54091006 gtgacaaaaacataa 54090992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 40942585 - 40942658
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||  ||| ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  40942585 tttgtaaaccaccctcaaattagtgtctgattttattaatattttaaactagtcattgtctttgtcaaaagttt 40942658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 464
Target Start/End: Complemental strand, 54458846 - 54458706
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 423  Q
    |||||||||| | |||||| |||||| |||| |||| ||||||||||| ||| || |  ||||||||||||||||| |||  |  || | |||||  |||    
T  54458846 tgtctttgtaggccactcttaaattaatctcaaactctattaatatttcaaactaatatctgtctttgtcaaaagtgtctcgattaggtccctcgttatg 54458747  T
Q  424 tgacaaaaacataaatacaaggacctaattaacaaactttt 464  Q
    |||||||||||| || ||||||| |||||| | ||||||||    
T  54458746 tgacaaaaacattaagacaaggatctaattgagaaactttt 54458706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 33614463 - 33614384
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||| |  |||||||||||||||  | ||||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  33614463 tgtctttgtaggagactctcaaattagtccatgactttattaatatttcaaactagtctctgtctttgacaaaagtttct 33614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 39051406 - 39051328
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||| ||| ||||| | |||||||| | | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39051406 tgtctttataaatcacttttaaattagt-tatgactctattaatattttaaaatagtcactgtctttgtcaaaagtttct 39051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 44137371 - 44137462
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||| | ||||| | | ||||||||| | |||||||||||||||| ||| ||||||||||| ||| ||||  |||||||||||||||    
T  44137371 aaccaccaatttggtccttatttttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaa 44137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 11383105 - 11383032
Alignment:
Q  329 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||| | | |||||||||||| | |||||| |||||||||||| |||||| ||||||||||||||||||||    
T  11383105 ttgtaagtgattatcaaattagtctatgactttagtaatattttaaaatagtca-tgtctttgtcaaaagtttct 11383032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 40942752 - 40942675
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||  | | |||||||||| | ||| |||||||||||||||||||||  ||| ||||||||||||||||    
T  40942752 tctttgtaagtcgtttttaaattagtctatgactatattaatattttaaattagtctttgtttttgtcaaaagtttct 40942675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 13432847 - 13432756
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||| | ||| ||||||||||||||| |||||||||||||| |   | |||||| |||||||| ||||| ||| |||||||||||||||    
T  13432847 caccaaattgatccctgtctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa-tagtctctgactttgtcaaaagttt 13432756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 401
Target Start/End: Original strand, 13302119 - 13302213
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||| ||   | |||||| |||| ||| ||||| |||||||| ||||||||||    
T  13302119 aaccaccaaattgatccctgtctttgtaagtcattctcaaattagtccctgcttctattaacatttcaaa-tagtctctgtctttttcaaaagttt 13302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 401
Target Start/End: Complemental strand, 25500546 - 25500468
Alignment:
Q  322 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||| |||| ||||||| ||||||||||||| || |||||| |||| |||||||||| ||| ||| ||||||||||||||    
T  25500546 catgcctttctaagtcattctcaaattagtcactgactttaataat-ttttaaattaatcattgtttttgtcaaaagttt 25500468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 45921940 - 45921893
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaa 375  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  45921940 tttgtaagtcattctcgaattagtctctgactttattaatattttaaa 45921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 471
Target Start/End: Complemental strand, 49448303 - 49448188
Alignment:
Q  356 aactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaa 455  Q
    |||| ||||||||||| ||| |||||  |||||||||||||||||| | ||  ||||  |||| ||| ||||||||||||||| |||  || |||||| |    
T  49448303 aactatattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatcgctcgtcatatgacaaaaacataaagacagtgatctaattga 49448204  T
Q  456 caaacttttaacaaag 471  Q
     |||||||| ||||||    
T  49448203 gaaacttttgacaaag 49448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 5138828 - 5138715
Alignment:
Q  30 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgaagtatggaattcctctggattttctgcagccattgattctgtgaca 129  Q
    |||||||||||||||||||||||||| || ||  ||||||||   |||||||||||| | ||||||||||| |   |||||||| | |||| |||||| |    
T  5138828 atccaagagttcctcaaatagctctg-gaacttgttcaaagactgatcaaatgaagtcttgaattcctctgcaagctctgcagctactgatcctgtgata 5138730  T
Q  130 ggccctatgctagag 144  Q
    || ||||||| ||||    
T  5138729 ggtcctatgccagag 5138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 7403357 - 7403260
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||||||| |||||||||||||   | | |||||||| ||  | ||||||||||||||||||  || |||||||||| || ||||||||||    
T  7403357 aaccatcaaatcggttcatgtctttgtaatgtattttcaaattaatccttgactttattaatattttaatataatcactgtcttggttaaaagtttct 7403260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 3465389 - 3465449
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgt 386  Q
    ||||||||| ||| ||| |||||||| | | ||||||||||||||||||||||||| ||||    
T  3465389 tctttgtaattcattcttaaattagtatatgactttattaatattttaaattagtctctgt 3465449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 39493843 - 39493771
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 396  Q
    ||||||| ||| ||||| | ||||| |||||||| | ||||||||||||||||||||   |||||||||||||    
T  39493843 tgtctttttaactcacttttaaattcgtctctaattctattaatattttaaattagtgcatgtctttgtcaaa 39493771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 13119460 - 13119381
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | | | |||||||||| | | ||| ||||||||||| ||| ||||| |||||||||| ||||||||||    
T  13119460 tgtctttgtaaatgattatcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttct 13119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 39051105 - 39051160
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||||||||||||||||||  | | | ||||||||||||||| |||||    
T  39051105 tctttgtaagtcactctcaaattagtcattgattctattaatattttaaaatagtc 39051160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 45921830 - 45921881
Alignment:
Q  420 catgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    ||||||||||||||||||| |||| ||||||||| | |||||||| ||||||    
T  45921830 catgtgacaaaaacataaagacaatgacctaattgataaacttttgacaaag 45921881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 55284148 - 55284053
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||||||  ||| |||| ||| ||||||| | | |||||||||||||| | ||||||||||| ||  ||||  ||||||||| |||||||||    
T  55284148 aaccaccaaattagtctatgtttttataagtcattattaaattagtctctaattctattaatatttcaatctagtttctgtctttgccaaaagttt 55284053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 54458602 - 54458692
Alignment:
Q  313 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||| ||||||| ||||||||| ||| |||||| |||||| |  ||||||||||||||| ||| || ||  ||| | ||||||||||||||    
T  54458602 aaattggtccatatctttgtaaatcattctcaatttagtccccgactttattaatatttcaaactaatctatgtttatgtcaaaagtttct 54458692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 13119230 - 13119270
Alignment:
Q  363 ttaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttct 13119270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 56087588 - 56087664
Alignment:
Q  318 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtca 394  Q
    ||||||| | ||||||||  ||||| |||||||| ||| | | |||||||||||||||||| || |||| |||||||    
T  56087588 ggtccatatatttgtaagcaactctaaaattagtgtctcattctattaatattttaaattaatctctgtatttgtca 56087664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 36184815 - 36184738
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||    
T  36184815 tgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagttt 36184738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 11275871 - 11275790
Alignment:
Q  320 tccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||  || | ||||||||||||||    
T  11275871 tccatgtctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttt 11275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 31065868 - 31065925
Alignment:
Q  346 attagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||    
T  31065868 attagtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttct 31065925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 36184522 - 36184595
Alignment:
Q  330 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| || ||| | ||| |||||||| |||||    
T  36184522 tgtaagtcactctcaaattagtctataactttattaatatttcaaaataatcattatctatgtcaaaaatttct 36184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 20399100 - 20399012
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    |||||||| ||||| | |||||||||| || ||||||||||||| || ||| ||||||||||| |||||||||  ||||||||| ||||    
T  20399100 caccaaattggtccctatctttgtaagacattctcaaattagtccctgactctattaatatttcaaattagtccttgtctttgtaaaaa 20399012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 5971966 - 5971891
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | ||| |||||||||  ||| ||||||||||||||| |||||| |||||||||||||| |||||    
T  5971966 tttgtaagtcattttcagattagtctcagactctattaatattttaaactagtcattgtctttgtcaaaactttct 5971891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 9637837 - 9637755
Alignment:
Q  318 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||||||||||| | ||||||||||||| |||||| |||   ||||||||| | |||| ||||||||||||||||||||    
T  9637837 ggtccgtgtctttgtaagtgattctcaaattagtccctaactctat---tattttaaaatggtcaatgtctttgtcaaaagtttct 9637755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 987373 - 987328
Alignment:
Q  332 taagtcactctcaaattagtctctaactttattaatattttaaatt 377  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  987373 taagtcactctcaaattagtctataactctattaatattttaaatt 987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 31046231 - 31046143
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||||| |||||||||||||| | ||||||||||  |||  ||| ||||||||||||||| |||||  || |||||||||||||||    
T  31046231 caaatcggtc-atgtctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttt 31046143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 33676544 - 33676617
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||| | ||| |||||| ||| ||||||||||||||||||||| || ||||||| ||| ||||||||||    
T  33676544 tttgtaagttattcttaaattaatctataactttattaatattttaaaataatcactgtttttatcaaaagttt 33676617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 8285301 - 8285238
Alignment:
Q  340 tctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||| || ||| ||||||||||||||| |||||  | ||||||||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttct 8285238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 33391593 - 33391514
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| | ||||||||||||| ||   ||||| ||||| ||||||||| || ||||| ||||||||||||    
T  33391593 tgtctttgtaagtcattatcaaattagtctcaaaaactattagtatttcaaattagtccctatctttatcaaaagtttct 33391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 438
Target Start/End: Original strand, 11275659 - 11275772
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgt 424  Q
    |||||||||  ||| ||| |||||||||  | | |||||||||||||| || |||||  |||||||||||||||||||| ||   ||| ||| | | |||    
T  11275659 gtctttgtagatcattctaaaattagtccatgattttattaatattttcaactagtctttgtctttgtcaaaagtttctcaatttgatccctagtcgtgt 11275758  T
Q  425 gacaaaaacataaa 438  Q
    ||||||||||||||    
T  11275759 gacaaaaacataaa 11275772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 31051292 - 31051204
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||| ||||||||||||| | ||||||||||| | |  ||| || |||||||||||| ||||| |||  ||||||||||||||    
T  31051292 caaatcggtcc-tgtctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttt 31051204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 4902220 - 4902264
Alignment:
Q  359 tttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  4902220 tttattaatattttaaattagtccctatctttgccaaaagtttct 4902264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 27354306 - 27354362
Alignment:
Q  341 ctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    |||||||||||| |||||| ||||||||||||||| ||||| |||| ||||| ||||    
T  27354306 ctcaaattagtccctaactatattaatattttaaaatagtctctgtttttgttaaaa 27354362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 8840105 - 8840022
Alignment:
Q  318 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||| ||| ||||||||  | ||||| ||||||| |  ||| ||||||||||| ||| ||||| |||||||||||||||||||    
T  8840105 ggtccctgtatttgtaagggattctcagattagtccccgactctattaatatttcaaaatagtccctgtctttgtcaaaagttt 8840022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 9900344 - 9900261
Alignment:
Q  388 tttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    |||||||||| ||||| ||  | || ||| ||||||||||||||||||| |||||| || |||||| | |||||||| ||||||    
T  9900344 tttgtcaaaaatttctcaattaaatcccttgacatgtgacaaaaacatagatacaaagatctaattgagaaacttttgacaaag 9900261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 31066161 - 31066088
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||||||| | ||| ||||||| | |  ||| ||||||||||||||| ||||| |||||||| ||||||    
T  31066161 tgtctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaa 31066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 32508955 - 32508922
Alignment:
Q  320 tccatgtctttgtaagtcactctcaaattagtct 353  Q
    ||||||| ||||||||||||||||||||||||||    
T  32508955 tccatgtttttgtaagtcactctcaaattagtct 32508922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 12640308 - 12640244
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatatt 370  Q
    ||||| ||||| ||||| ||||||||||||| | ||||||||||||| || | | ||||||||||    
T  12640308 aaccatcaaattggtccctgtctttgtaagtgattctcaaattagtcactgaatctattaatatt 12640244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 42709905 - 42709996
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||| ||||||||||||| | |||||||| ||||||  ||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  42709905 caaattggtccctgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttct 42709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 471
Target Start/End: Complemental strand, 30935416 - 30935271
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 425  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||| || || || ||||||||||||     | ||  || | ||||| ||||||    
T  30935416 tctttgtaagtcactctcaaattagtctccgactttattaatatttcaaactaatccctatctttgtcaaaaaaaattcaattaggtccctcgtcatgtg 30935317  T
Q  426 acaaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    ||||||||||||| | ||||| |||| | | |||||||| ||||||    
T  30935316 acaaaaacataaagataaggatctaagtgaaaaacttttgacaaag 30935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 21249057 - 21248998
Alignment:
Q  342 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  21249057 tcaaattagtttctaactttattaatattttaaattagtctccatctttgtcaaaagttt 21248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 26752084 - 26752017
Alignment:
Q  334 agtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||||  ||||||||||||||||||    
T  26752084 agtcactctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagttt 26752017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 41009019 - 41008922
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| | ||||  ||| ||||||||||| | |||||||| ||||| ||| ||||||||||||||| ||||| || ||||||| ||||||||||    
T  41009019 aaccaccaacttggtcactgtttttgtaagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttct 41008922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 12427833 - 12427912
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| ||||||||||||   | ||| |||||||||||||||||||||| | |||||| ||||| |||||    
T  12427833 tgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaattagtcattatctttgccaaaaatttct 12427912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 10525114 - 10524976
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 425  Q
    ||||||||||||||||||||||| ||| |  ||  ||||||||||| ||| |||||      |||||||||||||||| ||  || | ||||| ||||||    
T  10525114 tctttgtaagtcactctcaaatttgtccccgaccctattaatatttcaaactagtc------tttgtcaaaagtttctcaattaggtccctcgtcatgtg 10525021  T
Q  426 acaaaaacataaatacaaggacctaattaacaaacttttaacaaa 470  Q
    ||||||||||||| | | ||| |||||| | |||||||| |||||    
T  10525020 acaaaaacataaagatagggatctaattgagaaacttttgacaaa 10524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 3248320 - 3248399
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||  | ||||||||||||| ||| ||||||||||||| | ||| ||||  |||||||||||||| ||||||    
T  3248320 tgtctttgtaacccgctctcaaattagtatctgactttattaatatctcaaaatagtttctgtctttgtcaaatgtttct 3248399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 16830294 - 16830405
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 425  Q
    |||||||||||||||||||||||||| || || | ||||||||||  ||| ||||   ||||||||||| |||||||| ||  || | | ||| |||||     
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatattccaaactagtgcatgtctttgtcataagtttctcaattaggtccatcgtcatgta 16830393  T
Q  426 acaaaaacataa 437  Q
    ||||||||||||    
T  16830394 acaaaaacataa 16830405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 36478611 - 36478535
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttc 402  Q
    ||||| ||||||| |||||||||||| | ||||||||| ||||||| |||||||| | |  |||||||||| |||||    
T  36478611 tctttataagtcaatctcaaattagtttataactttatcaatatttcaaattagttattaactttgtcaaacgtttc 36478535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 3248532 - 3248445
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 396  Q
    |||||||| ||||| ||||||| |||   ||||| |||||||||| | ||| ||||||||| | ||| ||||| ||||||||||||||    
T  3248532 caccaaattggtccctgtctttataatcaactcttaaattagtctttgactatattaatatgtcaaaatagtctctgtctttgtcaaa 3248445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 35661058 - 35660967
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||| | ||||||||||| | |||||||| |||   | | ||||||||||| ||||||||   ||||||||| ||||||||||    
T  35661058 caaatcggtccatatttttgtaagtcattatcaaattactcttcgattctattaatatttcaaattagttcttgtctttgttaaaagtttct 35660967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 16810449 - 16810495
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattt 371  Q
    |||||||||||||||||||||||||||| |  ||| |||||||||||    
T  16810449 gtctttgtaagtcactctcaaattagtccccgactatattaatattt 16810495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 6086 - 6026
Alignment:
Q  343 caaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | ||||| ||||||||| |||||||||  ||||||| ||||| ||||||    
T  6086 caaattagtctttgactttgttaatatttcaaattagtctttgtctttatcaaacgtttct 6026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 39392592 - 39392564
Alignment:
Q  339 ctctcaaattagtctctaactttattaat 367  Q
    |||||||||||||||||||||||||||||    
T  39392592 ctctcaaattagtctctaactttattaat 39392564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 471
Target Start/End: Original strand, 6219625 - 6219772
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 423  Q
    ||||||| ||||||| ||| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||| ||||| ||  || | ||||   |||    
T  6219625 tgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaaatttctcaattaggtccctcattatg 6219724  T
Q  424 tgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    ||||||||||||||| ||   ||||||||| | | |||||| ||||||    
T  6219725 tgacaaaaacataaagacggtgacctaattgagatacttttgacaaag 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 38783894 - 38783971
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| |||||||||||  | ||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagtttct 38783971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 10595591 - 10595501
Alignment:
Q  313 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||| |||| ||||||||||||| || | |||||||| ||  ||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  10595591 aaattggtctatgtctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttct 10595501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 10377643 - 10377546
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| | ||||| ||||||||||||||| | |||||||||||| | ||| ||||||||||| |||||||||  ||| | |||||||| |||||    
T  10377643 aaccaccaagttggtccctgtctttgtaagtcattatcaaattagtctttgactctattaatatttcaaattagtccatgtttgtgtcaaaattttct 10377546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 28504711 - 28504784
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||||||||| |||||||||||||| | ||| ||||||||||| ||| ||||| |||| ||||||||||    
T  28504711 tgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaaa 28504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 8792967 - 8793014
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattt 371  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  8792967 tgtctttgtaagtcactctcaaattagtctccaactctattaatattt 8793014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 400
Target Start/End: Complemental strand, 46410920 - 46410826
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtt 400  Q
    ||||||||||| ||||  ||||||||||||| | |||||| ||||||| | ||| || |||||||| ||| ||||| |||||||| |||||||||    
T  46410920 aaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 403
Target Start/End: Original strand, 27293283 - 27293359
Alignment:
Q  327 ctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||||| ||||||||   | |||||| |||||||||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttct 27293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 6219831 - 6219772
Alignment:
Q  322 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||||| || ||||||||  |||||||||| ||||||||||||||| |||||    
T  6219831 catgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaactagtc 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 401
Target Start/End: Complemental strand, 34835815 - 34835720
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||| ||||| ||||| | | ||||||||| | | | |||||||| ||||||| ||||||||||||||||||||| || || ||| |||||||||    
T  34835815 aaccatcaaattggtccctatttttgtaagttatttttaaattagtttctaactctattaatattttaaattagtccctatcattgccaaaagttt 34835720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 34835593 - 34835667
Alignment:
Q  329 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||| ||  ||||||||   ||||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  34835593 ttgtaagtcattcctaaattagttcttaactttatcaatatttcaaactagtctctgtctttgtcaaaagtttct 34835667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 7790300 - 7790357
Alignment:
Q  344 aaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||| ||| |||||||||||||||||||||| |   ||||||||||||||||||    
T  7790300 aaattagtttctgactttattaatattttaaattaatttttgtctttgtcaaaagttt 7790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 15395209 - 15395266
Alignment:
Q  340 tctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    |||||||||||||| | ||| ||||||||||||||| ||||| |||||||||| ||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtctctgtctttgttaaaa 15395266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 27562671 - 27562748
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||| |||| |||| |||||| |  ||||| ||||||||||| |||||| |  |||||||||||||||||||||    
T  27562671 tctttgtatgtcattctcgaattagaccataactctattaatatttcaaattaatttctgtctttgtcaaaagtttct 27562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 50147302 - 50147230
Alignment:
Q  334 agtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaa 406  Q
    ||||||| |||||||| |||  |||||||||||||||||||| |||||  | | |||||||||||||| ||||    
T  50147302 agtcactttcaaattaatcttcaactttattaatattttaaactagtctatatttttgtcaaaagtttttgaa 50147230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 23399510 - 23399607
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaata---ttttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||| | ||| ||||||||| ||||| | | |||||||||||  ||||| ||||||||   ||| |||||||||| ||| ||||||||||||||||    
T  23399510 caccaatttggtgcatgtctttctaagttaatatcaaattagtccttaactctattaatactatttcaaattagtcattgtttttgtcaaaagtttct 23399607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 27293489 - 27293426
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctt 389  Q
    ||||||||||||| ||| |||||||||| | ||||||||||||||| ||| ||| | |||||||    
T  27293489 tctttgtaagtcattcttaaattagtctatgactttattaatatttcaaactagcccctgtctt 27293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 6061613 - 6061659
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattt 371  Q
    |||||||||||| | |||||||||||||  |||||||||||||||||    
T  6061613 gtctttgtaagtgattctcaaattagtccttaactttattaatattt 6061659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 15395473 - 15395431
Alignment:
Q  359 tttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  15395473 tttattaatattttaaaatagttactgtttttgtcaaaagttt 15395431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 40650104 - 40650043
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattt 371  Q
    |||||| | ||||||||||||||||||| | ||||||||||||| ||||||  ||||||||||    
T  40650104 caccaatttggtccatgtctttgtaagtgattctcaaattagtc-ctaactccattaatattt 40650043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 844627 - 844676
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctct 355  Q
    ||||||||| |  ||| |||||||||||||||||||||||||||| ||||    
T  844627 aaccaccaatttcgtctatgtctttgtaagtcactctcaaattagactct 844676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 4066923 - 4066984
Alignment:
Q  342 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||| ||| || ||| |||||||| || ||| | |||||||||||||||||||||||||    
T  4066923 tcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttct 4066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 7790483 - 7790411
Alignment:
Q  330 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| |||||||||||| | | ||| ||||||||||| ||||||||  || ||||| ||||||||||||    
T  7790483 tgtaagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttct 7790411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 38576563 - 38576648
Alignment:
Q  313 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaag 398  Q
    |||| ||||| | ||||||||| ||| |||||||||||||| | | | ||||||||||| |||  |||| |||||||| |||||||    
T  38576563 aaattggtccttatctttgtaaatcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatcaaaag 38576648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 46410638 - 46410722
Alignment:
Q  318 ggtccatgtctttgtaagtcact-ctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||||||||| | | || |||||||||  | | | ||||||||||| ||| ||||| | |||||||||||||||||    
T  46410638 ggtccatgtctttgtaagtgatttcttaaattagtccatgaatatattaatatttcaaaatagtctcagtctttgtcaaaagttt 46410722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 9530547 - 9530610
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtc 387  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  9530547 tgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtctctgtc 9530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 19121854 - 19121933
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||  || ||||||||||||| ||||    
T  19121854 tgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaactagtttctatctttgtcaaaagcttct 19121933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 3960949 - 3960852
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||   |||| ||||||||||||| | | ||||| |||||| | ||| |||||||||||||||||||||  ||| ||||||||||||||||    
T  3960949 aaccaccaaagttgtccttgtctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtccttgtgtttgtcaaaagtttct 3960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 21394236 - 21394311
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||  |||  |||||||||||| ||||||||||||||||  ||||| ||||||||||||||| |||||    
T  21394236 aaccaccaaattagtcactgtctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtc 21394311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 465
Target Start/End: Complemental strand, 3890113 - 3889971
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtc-tctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 422  Q
    |||||||||  |||||||| ||  ||||| || |||| |||||||||| |||| ||||   |||||||||||||||||||| ||  || | |||||   |    
T  3890113 tgtctttgttcgtcactctaaacctagtcctccaactctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtccctcgttgt 3890014  T
Q  423 gtgacaaaaacataaatacaaggacctaattaacaaactttta 465  Q
    ||||||||||||| || |||||||||||||| | |||||||||    
T  3890013 gtgacaaaaacatgaagacaaggacctaattgagaaactttta 3889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 30747944 - 30747996
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaat 376  Q
    ||||||| |||||||||||||||||| ||||||||| |||| |||||||||||    
T  30747944 tgtctttctaagtcactctcaaattaatctctaactctattgatattttaaat 30747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 3960721 - 3960832
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 423  Q
    |||||||||||||||   |||| |||||||| |||| |||||| |||| |||| ||| | |||||||||||||| |||||  |  |||| ||||  ||||    
T  3960721 tgtctttgtaagtcatcatcaacttagtctccaactctattaacatttcaaatcagttattgtctttgtcaaaactttctccattagatccctcatcatg 3960820  T
Q  424 tgacaaaaacat 435  Q
    ||||||||||||    
T  3960821 tgacaaaaacat 3960832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 19122062 - 19121985
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| |||||||||||| | ||| ||||||||||| ||| ||||   ||||||||| | ||||||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttct 19121985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 21394568 - 21394490
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||  ||| ||  | || |||||||||| |||||||    
T  21394568 tgtctttgtaagtcactctcaaattagtc-ccgactttattaatattgaaaaataacctctatctttgtcaatagtttct 21394490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 5656620 - 5656578
Alignment:
Q  361 tattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||    
T  5656620 tattaatattttaaactagtctctgtctttgttaaaagtttct 5656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 21969351 - 21969302
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaa 375  Q
    ||||||||||| | |||||||||||||||| |||  ||||||||||||||    
T  21969351 tctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaa 21969302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 24794227 - 24794190
Alignment:
Q  344 aaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  24794227 aaattagtctctaactttattaatgtttcaaattagtc 24794190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 26330227 - 26330264
Alignment:
Q  366 atattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  26330227 atattttaaaatagtcaatgtctttgtcaaaagtttct 26330264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 6782944 - 6782912
Alignment:
Q  342 tcaaattagtctctaactttattaatattttaa 374  Q
    ||||||||||| |||||||||||||||||||||    
T  6782944 tcaaattagtccctaactttattaatattttaa 6782912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 39840659 - 39840738
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||| | |||||||||||||||| ||| ||||||||||| ||| |||||| ||| ||||||||||||||||    
T  39840659 tgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttct 39840738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 55447279 - 55447182
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||| |||| ||||  ||||||||||||| | |||||||| ||||||| ||| | ||||||||||||| ||||| |||||||| ||||||||||||    
T  55447279 aaccactaaattggtctttgtctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttct 55447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 16298174 - 16298264
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 396  Q
    |||||||||||| |||  ||||||||||||||||||||||| |||||    ||||||||||||||||||| || || |||| |||||||||    
T  16298174 aaccaccaaatcagtcactgtctttgtaagtcactctcaaactagtccacgactttattaatattttaaaataatctctgtgtttgtcaaa 16298264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 33075349 - 33075275
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    |||||||| |||||||||||||||||| ||  ||| | |||||||||||||||||||||| ||| ||||||||||    
T  33075349 atgtctttataagtcactctcaaattaatcattaaatctattaatattttaaattagtcattgtttttgtcaaaa 33075275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 45965895 - 45965804
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||| ||| |||||||||||||||||||||||| | | ||| ||||||||||| ||| |||| | | ||||| ||||||||||||    
T  45965895 caaattggtccctgtatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttct 45965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 40472831 - 40472909
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||| |||||||||||||||| | ||| |||||| |||||||| ||||   | ||||||||||||||||||    
T  40472831 gtctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttct 40472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 20124322 - 20124246
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||||| | |||||||||||||| ||| ||| ||||||| ||| |||||| ||| ||||||||||||||    
T  20124322 tgtctttgtaagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagttt 20124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 471
Target Start/End: Complemental strand, 29504997 - 29504832
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctga 405  Q
    ||||| |||||  |||||| || ||||||  ||||||||||||||||   |||| ||||||||||||||| ||||   | ||||||| ||||||||||      
T  29504997 aaccatcaaatttgtccatatcattgtaaaccactctcaaattagtcctcaactctattaatattttaaactagtttttatctttgttaaaagtttctcg 29504898  T
Q  406 accagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    |   | | ||||| |||||||||||| |||||| |||  ||||||||| | |||||||||| ||||    
T  29504897 atttggtccctcgtcatgtgacaaaagcataaagacattgacctaattgaaaaacttttaataaag 29504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 39840969 - 39840892
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | ||||||||||||  |||||||||||||||||| ||| ||||| || ||||||| |||| |||||    
T  39840969 tctttgtaagtgattctcaaattagttcctaactttattaatatttcaaaatagtccctatctttgttaaaattttct 39840892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 33429196 - 33429121
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||||| |||||||||||   |||| ||||||||||||||| || ||| | ||||| ||||||||||    
T  33429196 tctttgtaagtcactttcaaattagtcatcaactctattaatattttaaaataatcaatatctttatcaaaagttt 33429121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 1431542 - 1431476
Alignment:
Q  330 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 396  Q
    ||||| |||||||||||||||||   || | ||||||||| | ||||||||||||||||||||||||    
T  1431542 tgtaattcactctcaaattagtcctcaattctattaatatctcaaattagtcactgtctttgtcaaa 1431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 27812204 - 27812261
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 380  Q
    |||||||||||||||| ||| |||||||||||| | | ||||||||||| ||||||||    
T  27812204 atgtctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 42045771 - 42045848
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||||| |  ||||||||| ||  ||||| ||||||||||| ||| |||||| ||||| ||||||||||||    
T  42045771 tgtctttgtaagtgatcctcaaattaatccataactctattaatatttcaaaatagtcattgtctatgtcaaaagttt 42045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 29504774 - 29504846
Alignment:
Q  329 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||| ||| |||||||||||||  ||||| || |||||||||||| |||||| ||||||| | ||||||||    
T  29504774 ttgtaattcattctcaaattagtccataactctaataatattttaaactagtcattgtctttattaaaagttt 29504846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 40861029 - 40860973
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||||| ||| || ||||||||| | ||||||||||||| |||||||||    
T  40861029 gtctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtc 40860973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 41709355 - 41709291
Alignment:
Q  337 cactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||||||||||| | ||||||||||||||||||||| |||   | ||||||| ||||||||    
T  41709355 cactctcaaattagtccccaactttattaatattttaaataagtttatatctttgttaaaagttt 41709291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 31300442 - 31300371
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||||  | |||||||||||||| ||||| |||| ||||||||||||| |   ||||||||||||||    
T  31300442 tctttgtaagagattctcaaattagtctataactctatttatattttaaattaatttttgtctttgtcaaaa 31300371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 3910245 - 3910287
Alignment:
Q  338 actctcaaattagtctctaactttattaatattttaaattagt 380  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||    
T  3910245 actctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 45965672 - 45965746
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||||||||| ||||||||||| ||||| | | ||||||||||| ||  |||||  ||||||||| ||||    
T  45965672 atgtctttgtaagtcgctctcaaattaatctctgattctattaatatttcaatatagtccttgtctttgttaaaa 45965746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 17094 - 17179
Alignment:
Q  318 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||||||||||  ||||||||||||||| | |||| ||||||||||||||| ||||  |||||||||||||| ||||||    
T  17094 ggtccctgtctttgtaagatactctcaaattagtcccaaactctattaatattttaaactagttcctgtctttgtcaaacgtttct 17179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 33229497 - 33229635
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 425  Q
    |||||||||||| |||||||||||||| | |||  ||||||||||| ||| |||||      |||||||||||||||| ||  || | ||||| ||||||    
T  33229497 tctttgtaagtcgctctcaaattagtccccaaccctattaatatttcaaactagtc------tttgtcaaaagtttctcaattaggtccctcgtcatgtg 33229590  T
Q  426 acaaaaacataaatacaaggacctaattaacaaacttttaacaaa 470  Q
    ||||||||||||| ||| ||| |||||| | |||||||| |||||    
T  33229591 acaaaaacataaagacagggatctaattgagaaacttttgacaaa 33229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 401
Target Start/End: Complemental strand, 10028970 - 10028876
Alignment:
Q  307 accaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||  |||  |||||||||| ||||||||||||||||||| | ||||||||||||||| ||| |||||  ||||||| ||||| ||||    
T  10028970 accaccaaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaactagtcgttgtctttttcaaaggttt 10028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 10028633 - 10028730
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | || |||| ||||||||||| ||||||||||||| || ||| ||||||||||| |||||||||  | || ||| |||||||||||    
T  10028633 aaccaccaaattgatcaatgtatttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttct 10028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 10028737 - 10028822
Alignment:
Q  318 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| ||||||||||| ||||||||||||| |  ||| ||||||||||| |||| |||| || |||||| |||||||||||    
T  10028737 ggtccatgtatttgtaagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttct 10028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 5840352 - 5840410
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||||||||||| |||||||||||||||||| | | ||||||||||||||| |||||    
T  5840352 atgtctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 5840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 29490376 - 29490451
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||| |||||||||||| | | | ||||||||||||||| ||||   ||||||||| ||||||||||    
T  29490376 tttgtaagtcactatcaaattagtctatgattatattaatattttaaaatagtttttgtctttgtaaaaagtttct 29490451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 23768775 - 23768825
Alignment:
Q  340 tctcaaattagtctctaactttattaatattttaaattagtcactgtcttt 390  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| ||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtctctgtcttt 23768825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 33229666 - 33229620
Alignment:
Q  357 actttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||    
T  33229666 actttattaatattttaaattagtctctctgtttgtcaaaagtttct 33229620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 21136587 - 21136664
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||||  |||||| |||||||||||||| | ||| ||||||||||| ||| |||||  | ||||||||||||||||    
T  21136587 tgtcttttaaagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagttt 21136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 21136793 - 21136650
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgac 427  Q
    ||||||||| | ||| |||||||||| |  || ||||||||||| ||| |||||||| ||||||||||||  |||| ||  || ||  ||| || |||||    
T  21136793 tttgtaagtaattcttaaattagtctttgtctctattaatatttcaaaatagtcactatctttgtcaaaaaattctcaattaggtttttcgtcaagtgac 21136694  T
Q  428 aaaaacataaatacaaggacctaattaacaaacttttaacaaag 471  Q
    ||||  ||||| | | |||||||||| | |||||||| ||||||    
T  21136693 aaaagtataaagaaagggacctaattgaaaaacttttgacaaag 21136650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 29490665 - 29490606
Alignment:
Q  344 aaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||| ||||||||||||||||||| || ||  | |||| |||||||||||||    
T  29490665 aaattagtctctgactttattaatattttaaaataatctttatcttcgtcaaaagtttct 29490606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 41424410 - 41424464
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 380  Q
    ||||||||||| | | |||||| ||||||| ||| ||||||||||||||||||||    
T  41424410 tctttgtaagtaattttcaaatcagtctctgactctattaatattttaaattagt 41424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 5841042 - 5840961
Alignment:
Q  325 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaa 406  Q
    ||||||||| |||||| ||||| |||| | | ||| |||||||||||||| |||||  || ||||| |||||||| ||||||    
T  5841042 gtctttgtatgtcactttcaaaatagtttttgactctattaatattttaatttagtttctatctttatcaaaagtgtctgaa 5840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 32029700 - 32029639
Alignment:
Q  342 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||||||||||| ||| |||| |||||||||| ||||   |||||||||||||| |||||    
T  32029700 tcaaattagtctctgactctatttatattttaaaatagttcatgtctttgtcaaaaatttct 32029639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 23961724 - 23961644
Alignment:
Q  322 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttc 402  Q
    ||||||||||||||||| | |||||| ||||||| | |  |||||||||| ||| ||||| ||  |||| |||||||||||    
T  23961724 catgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagtttc 23961644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 17658758 - 17658855
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||| |||| | ||||||| ||| ||||||||| ||||||||||| | |||| ||||||||||| ||| |||||| |||||||||||||| |||||    
T  17658758 aaccactaaattgatccatgtatttttaagtcactatcaaattagtccccaactctattaatatttcaaaatagtcattgtctttgtcaaaaatttct 17658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 323 - 470
Target Start/End: Original strand, 6511016 - 6511163
Alignment:
Q  323 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 422  Q
    |||||||| ||||||| | |||||||||||| | | | | ||||||||| ||| ||||| |  |||||||||||| ||||| ||  |||||| ||  |||    
T  6511016 atgtctttataagtcattttcaaattagtctatgattctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaaatagattcttcatcat 6511115  T
Q  423 gtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaa 470  Q
    |||||||||||||||| ||| ||||| |||| | |||||||| |||||    
T  6511116 gtgacaaaaacataaagacatggaccaaattgagaaacttttgacaaa 6511163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 22191390 - 22191461
Alignment:
Q  332 taagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||| | |||||||||||| |||||| |||||||||||||| |||||  ||||||||||||||||||||    
T  22191390 taagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttct 22191461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 22191611 - 22191527
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtcttt 390  Q
    ||||||||| | | ||| || |||||||||||||||||||||||||| || ||| ||||||||||||||| |||||  |||||||    
T  22191611 aaccaccaatttgatccttgcctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttt 22191527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 32014075 - 32013984
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    ||||||||| | ||||  ||| ||||||||| | |||||||||||||| | ||| |||| |||||| ||| |||||||||||||||||||||    
T  32014075 aaccaccaatttggtcgctgtatttgtaagtgattctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtcaaaa 32013984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 32503121 - 32503046
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||| | |||||||||||||  ||| |||| |||||||||| |||||| ||||||||||||||| ||||    
T  32503121 tttgtaagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattct 32503046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 33940112 - 33940037
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| | |||||||||||||  | ||||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  33940112 tttgtaagtgattctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttct 33940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 17672926 - 17673001
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||| |||| | ||||||| ||| ||||||||||||||||||||||| || | ||||||||||| ||| |||||    
T  17672926 aaccactaaattgatccatgtatttttaagtcactctcaaattagtctccaattctattaatatttcaaaatagtc 17673001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 35736709 - 35736772
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatat 369  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||| || ||||||    
T  35736709 aaccaccaaattggtccatgtctttgtaattcactctcaaactagtcactgactctactaatat 35736772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 18561610 - 18561656
Alignment:
Q  322 catgtctttgtaagtcactctcaaattagtctctaactttattaata 368  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  18561610 catgtctttgtaagtcattctcaaattagtcttcaactttattaata 18561656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 2451218 - 2451166
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 380  Q
    ||||||||||| |||||||||||||| ||||| |||||| ||| |||||||||    
T  2451218 tttgtaagtcattctcaaattagtctttaactctattaacattataaattagt 2451166  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 6511225 - 6511148
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||| | | |||||||||||  | |||  |||||||||||||||||  |||| ||||||||||||||||    
T  6511225 tgtctttgtaagtcatttttaaattagtctcagatttt--taatattttaaattagtttctgtgtttgtcaaaagtttct 6511148  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 17627854 - 17627929
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    |||||| |||| | ||||||| ||| ||||||||| ||||||||||| | |||| ||||||||||| ||| |||||    
T  17627854 aaccactaaattgatccatgtatttttaagtcactttcaaattagtcaccaactctattaatatttcaaaatagtc 17627929  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 41440020 - 41440071
Alignment:
Q  329 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 380  Q
    |||||||||| | | |||||||||| |||||||||||||||||| |||||||    
T  41440020 ttgtaagtcatttttaaattagtctataactttattaatattttgaattagt 41440071  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 8033935 - 8033878
Alignment:
Q  346 attagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||||| ||| ||||||||||||||||||| | ||   ||||||||||||||||||||    
T  8033935 attagtttctgactttattaatattttaaaatggtttatgtctttgtcaaaagtttct 8033878  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 8257658 - 8257561
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||| | ||||||||| ||||| ||| | | |||||||||| | ||| ||||| |||||||||||| ||  | ||||||| ||||||||||    
T  8257658 aaccatcaaattgatccatgtctatgtaactcatttttaaattagtctttgactctattattattttaaattaatctttttctttgttaaaagtttct 8257561  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 17184764 - 17184833
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 381  Q
    ||||| ||| ||||||||||||||  | | ||||| |||||||| ||| ||||||||||||||| |||||    
T  17184764 caaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtc 17184833  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 32502807 - 32502891
Alignment:
Q  319 gtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||| ||| ||||||||||| ||||||||||||  || ||||||||| ||||| ||| ||||   ||||||||| ||| ||||||    
T  32502807 gtccttgtttttgtaagtcattctcaaattagttcctcactttattagtatttcaaaatagttcatgtctttgttaaatgtttct 32502891  T

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Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 122635 - 122547
Alignment:
Q  309 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 397  Q
    |||||| | ||||| ||||||||||||  | |||||||||||||||| ||| ||||||||||| ||| |||||  ||||||||||||||    
T  122635 caccaagttggtccctgtctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaaa 122547  T

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Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 62678 - 62768
Alignment:
Q  313 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    |||| |||| |||||||||||||  | |||||||||||||    ||| |||| |||||||||||||||   | ||||||||||||||||||    
T  62678 aaattggtctatgtctttgtaagagattctcaaattagtcaacgactctattgatattttaaattagttcttatctttgtcaaaagtttct 62768  T

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Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 11973 - 11907
Alignment:
Q  306 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatatttt 372  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  11973 aaccatcaaattgatccatgtctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11907  T

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Target: scaffold0198; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 11594 - 11542
Alignment:
Q  320 tccatgtctttgtaagtcactctcaaattagtctctaactttattaatatttt 372  Q
    |||||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  11594 tccatgtctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11542  T

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Target: scaffold0528 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 1649 - 1737
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    ||||||||||| ||||||||||||| | ||||||||||| | |  ||| || |||||||||||| ||||| |||  ||||||||||||||    
T  1649 caaatcggtcc-tgtctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttt 1737  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 19789 - 19837
Alignment:
Q  355 taactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||||||||||||||| |||||  ||| ||||||||||||||||    
T  19789 taactttattaatattttaaactagtctttgtgtttgtcaaaagtttct 19837  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 6311 - 6220
Alignment:
Q  312 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||| ||| ||||||||| | |||||||||||||| | ||| ||||||||||| ||| ||||   || |||||| ||||||||||    
T  6311 caaattggtccctgtttttgtaagttattctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttct 6220  T

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Target: scaffold0066 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 11992 - 12067
Alignment:
Q  328 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||||||| ||||||||||| || | ||| ||||||||||||||||| ||||   || |||| ||||||||||||    
T  11992 tttgtaagttactctcaaatttgtttttaattttattaatattttaaaatagtttttgcctttatcaaaagtttct 12067  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 10875 - 10952
Alignment:
Q  326 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 403  Q
    ||||| ||||| | |||| ||||||||| | | ||||||||||||||||| ||||   | ||||||||||||||||||    
T  10875 tctttttaagtgattctctaattagtctatgattttattaatattttaaaatagtttatatctttgtcaaaagtttct 10952  T

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Target: scaffold0340; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 11083 - 11006
Alignment:
Q  324 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 401  Q
    |||||| |||||| | |||||||||||||  | | ||||||||||| ||||| |||||  ||||||| ||||||||||    
T  11083 tgtcttggtaagtgattctcaaattagtccatgaatttattaatatcttaaaatagtctttgtctttatcaaaagttt 11006  T

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