View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_high_12 (Length: 346)
Name: NF11481_high_12
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 31202495 - 31202148
Alignment:
| Q |
1 |
acatggagtaagcagcaggctttggatcagaatagaagacacaagagcttcaaaagtaagagttgatagaagtgacaacattacattactaagcatatat |
100 |
Q |
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| T |
31202495 |
acatggagtaagcatcaggctttgaatcagaatagaagacacaagagcttcaaaagtaatagttgatagaagtgacaacattacattattaagcatatat |
31202396 |
T |
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| Q |
101 |
tctaatctaacaagtgaa---------gcaat---------atttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaagg |
182 |
Q |
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| T |
31202395 |
tctaatctgacaactaaaatgaacagagccatttattccttatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaagg |
31202296 |
T |
|
| Q |
183 |
tgaaacgataagccgaaacatgaacaattttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataat |
282 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202295 |
tgaaacgatgagccgaaacatgaacaattttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataat |
31202196 |
T |
|
| Q |
283 |
cctcatgaattcaatgaagtacctgtgttttacagatctcatcattct |
330 |
Q |
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| T |
31202195 |
cctcatgaattcaatgaagtacctgtgttttacagatctcatcattct |
31202148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 110 - 321
Target Start/End: Complemental strand, 31215650 - 31215439
Alignment:
| Q |
110 |
acaagtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaa |
209 |
Q |
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| T |
31215650 |
acaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaagctgaaacgatgagccgaaacatgaacaa |
31215551 |
T |
|
| Q |
210 |
ttttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtg |
309 |
Q |
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| T |
31215550 |
ttttacgcctttgccgcggctccggagaacagattctagagcctatgatgctcctcctcacacttccaataatcctcatgaattcaatgaagttcctgtg |
31215451 |
T |
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| Q |
310 |
ttttacagatct |
321 |
Q |
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|||| ||||||| |
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| T |
31215450 |
tttttcagatct |
31215439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31215769 - 31215695
Alignment:
| Q |
1 |
acatggagtaagcagcaggctttggatcagaatagaagacacaagagcttcaaaagtaagagttgatagaagtga |
75 |
Q |
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| T |
31215769 |
acatgcagtaaacatcaggctttgaatcagaatagaaaacacaagagcttcaaaagtaagagttgatagaagtga |
31215695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 112 - 326
Target Start/End: Complemental strand, 13606138 - 13605924
Alignment:
| Q |
112 |
aagtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13606138 |
aagtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgttcaattgaggaggaaggtgaaacgatgagccgaaacatgaacaatt |
13606039 |
T |
|
| Q |
212 |
ttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgtt |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
13606038 |
ttacgccttagccagggcttcggagaacagattctagagcctatgatgctccttatcaaacttacaataatcctcatgaattcaattaagtacctgtgtt |
13605939 |
T |
|
| Q |
312 |
ttacagatctcatca |
326 |
Q |
| |
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|||| |||||||||| |
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| T |
13605938 |
ttacggatctcatca |
13605924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13606173 - 13606136
Alignment:
| Q |
1 |
acatggagtaagcagcaggctttggatcagaatagaag |
38 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
13606173 |
acatggagtaagcagcaggctttgaatcagaatagaag |
13606136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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