View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_high_3 (Length: 586)
Name: NF11481_high_3
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 31797468 - 31797184
Alignment:
| Q |
9 |
aatgaaaatgtgaaacatcatcagaatactgcattattgctcatacaaggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaa |
108 |
Q |
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| T |
31797468 |
aatgaaaatgtgaaacatcatcagaatactgcattattgctcatacaaggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaa |
31797369 |
T |
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| Q |
109 |
ttctagaggattctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
31797368 |
gtctagaggattctgcatcttctaccatggatacatgattagcatgctcagaatatttcaaaggagttgtcaaaactacttgtacgtcttatgtaaaaag |
31797269 |
T |
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| Q |
209 |
agacggtgaacccaaagataactcggcatacactttgatactcccccgtttcaggattgaaacatgccatgacaaatgaccaatt |
293 |
Q |
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| T |
31797268 |
agacggtgaacccaaacataactcggcatacaccttgatactcccccgtttcaggattgaaacgtgccatgacaaatgaccaatt |
31797184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 290 - 480
Target Start/End: Complemental strand, 31797155 - 31796965
Alignment:
| Q |
290 |
aatttgtgaccagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaac |
389 |
Q |
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| T |
31797155 |
aatttgtgaccagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaac |
31797056 |
T |
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| Q |
390 |
gcattatcaactgctcaacacgaataatctgactgttaaatattactnnnnnnnnttagcaatgcctatattcatctgctttcctttaact |
480 |
Q |
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| T |
31797055 |
gcattatcaactgctcaacacgaataatctgactgttaaatattactaaaaaaaattagcaatgcctatattcatctgctttcctttaact |
31796965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 31791214 - 31791048
Alignment:
| Q |
119 |
ttctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaagagacggtgaa |
218 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||| |
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| T |
31791214 |
ttctgcatcttctaccatagatgcatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtacctc-aatgtaaaaagagtctgtgaa |
31791116 |
T |
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| Q |
219 |
cccaaagataactcggcatacactttgatactcccccgtttcaggattgaaacatgccatgacaaatg |
286 |
Q |
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| T |
31791115 |
cccagacattactcggcacacactttgatactcttcagtttcaggattgaaacatgccatgagaaatg |
31791048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 298 - 419
Target Start/End: Complemental strand, 31789883 - 31789762
Alignment:
| Q |
298 |
accagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaacgcattatc |
397 |
Q |
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|||||||||||||||||||||||||||| || ||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
31789883 |
accagatgcatacactttcgtcttaggcggagagggaaacccagtaacctgcaaacagtacttcaatggatcagcaagactgtatatgaaacacaatatc |
31789784 |
T |
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| Q |
398 |
aactgctcaacacgaataatct |
419 |
Q |
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||||||| || || |||||||| |
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| T |
31789783 |
aactgctaaaaacaaataatct |
31789762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 480 - 567
Target Start/End: Complemental strand, 31796912 - 31796826
Alignment:
| Q |
480 |
ttgggaatgacgattttacgaatggaggttagttccaaagaggagagagaatctgcatgaagctctgagtgagtgtgagagcgttgtt |
567 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31796912 |
ttgggagtgacgatttta-gaatggaggttagttccaaagaggacagagaatctgcatgaagctctgagtgagtgtgagagcgttgtt |
31796826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 31786071 - 31786007
Alignment:
| Q |
9 |
aatgaaaatgtgaaacatcatcagaatactgcattattgctcatacaaggccaaaactaggtaga |
73 |
Q |
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| T |
31786071 |
aatgaaaatatgaaacatcatcagaatactgcattattgctcatacaaggccaaaactaggtaga |
31786007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 31799879 - 31799810
Alignment:
| Q |
120 |
tctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactactt |
189 |
Q |
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||||||||||||| || ||||||| |||| |||||||| | ||||| |||||||||||||||||||||| |
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| T |
31799879 |
tctgcatcttctaacacagatacataattaacatgcccatagtattttaaaggatatgtcaaaactactt |
31799810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 31804302 - 31804266
Alignment:
| Q |
290 |
aatttgtgaccagatgcatacactttcgtcttaggca |
326 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |
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| T |
31804302 |
aattggtgaccagatgcatacactttcttcttaggca |
31804266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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