View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11481_high_6 (Length: 493)
Name: NF11481_high_6
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 135 - 428
Target Start/End: Original strand, 2853980 - 2854271
Alignment:
| Q |
135 |
gggttaccttgaacaccagaatgataaacaccaagaccaaaccaataagcgtaaccattaattggggtaagatcataaacgttgaggtaaaccggaaccg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853980 |
gggttaccttgaacaccagaatgataaacaccaagaccaaaccaataagcgtaaccattaattggggtaagatcataaacgttgaggtaaaccggaaccg |
2854079 |
T |
|
| Q |
235 |
aaccgggttttttcttccgcggcaacggaacaagtttacacagcattgtgaattatgcaaattgtgaaaatttcgaagctttgttcttcnnnnnnnnnnc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2854080 |
aaccgggttttttcttccgcggcaacggaacaagtttacacagcattgtgaattatgcaaattgtgaaaaattcgaagctttgttcttcaaaaaatat-- |
2854177 |
T |
|
| Q |
335 |
agagagaattcaagggtaaattgggaagaatgaatattctgtttacccttgaaattttctctctatgatttgagtgattctttaattgaaagca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854178 |
agagagaattcaagggtaaattgggaagaatgaatattctgtttacccttgaaattttctctctatgatttgagtgattctttaattgaaagca |
2854271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2853864 - 2853927
Alignment:
| Q |
19 |
ttttatatacaaagaattgagctttctaccaaacatgtaataataaactcatcacacggatctg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853864 |
ttttatatacaaagaattgagctttctaccaaacatgtaataataaactcatcacacggatctg |
2853927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 2854295 - 2854335
Alignment:
| Q |
446 |
aataaaagaagataaggtatatgattatgctttctcctttg |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854295 |
aataaaagaagataaggtatatgattatgctttctcctttg |
2854335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 49069516 - 49069401
Alignment:
| Q |
137 |
gttaccttgaacaccagaatgataaacaccaagaccaaaccaataagcgtaaccattaattggggtaagatcataaacgttgaggtaaaccggaaccgaa |
236 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||||| ||||||||| |||||||||||||| || |||||||| ||||| || ||||| || || | |
|
|
| T |
49069516 |
gttaccttgaactcctgaatggtagacaccaagaccaagccaataagcataaccattaattggtgtgagatcatagacgttaagataaacagggacggtg |
49069417 |
T |
|
| Q |
237 |
ccgggttttttcttcc |
252 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
49069416 |
cctggttttttcttcc |
49069401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 1567782 - 1567732
Alignment:
| Q |
140 |
accttgaacaccagaatgataaacaccaagaccaaaccaataagcgtaacc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1567782 |
accttgaacaccagaatgataaacaccaagaccaaaccagtaagcataacc |
1567732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University