View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11481_low_14 (Length: 301)

Name: NF11481_low_14
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11481_low_14
NF11481_low_14
[»] chr8 (2 HSPs)
chr8 (1-288)||(29271875-29272162)
chr8 (156-236)||(22023240-22023320)
[»] chr6 (37 HSPs)
chr6 (1-288)||(27680820-27681107)
chr6 (1-279)||(27696637-27696913)
chr6 (1-288)||(27609157-27609444)
chr6 (1-279)||(27716546-27716823)
chr6 (1-235)||(26804325-26804559)
chr6 (1-223)||(26648291-26648513)
chr6 (1-223)||(26754259-26754481)
chr6 (1-235)||(31286411-31286645)
chr6 (1-228)||(26625082-26625309)
chr6 (1-228)||(26731059-26731286)
chr6 (1-231)||(27675701-27675931)
chr6 (1-235)||(27704334-27704568)
chr6 (1-235)||(28794217-28794451)
chr6 (1-231)||(27591104-27591334)
chr6 (1-235)||(28788096-28788330)
chr6 (5-235)||(26657834-26658064)
chr6 (5-235)||(26763805-26764035)
chr6 (5-169)||(27425765-27425929)
chr6 (65-230)||(26885992-26886157)
chr6 (67-179)||(27663347-27663459)
chr6 (1-174)||(26813352-26813525)
chr6 (43-235)||(26863494-26863686)
chr6 (65-179)||(27216377-27216491)
chr6 (1-235)||(26825674-26825908)
chr6 (1-100)||(25491525-25491624)
chr6 (53-173)||(26850568-26850688)
chr6 (1-157)||(26960933-26961086)
chr6 (65-235)||(27602795-27602965)
chr6 (65-169)||(27529444-27529548)
chr6 (227-270)||(31286666-31286709)
chr6 (227-261)||(26648546-26648580)
chr6 (227-261)||(26754514-26754548)
chr6 (53-157)||(26979299-26979406)
chr6 (68-126)||(26938962-26939020)
chr6 (76-117)||(25484978-25485019)
chr6 (76-112)||(25512809-25512845)
chr6 (76-112)||(26144787-26144823)
[»] scaffold0349 (1 HSPs)
scaffold0349 (124-279)||(15245-15399)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-235)||(11773-12007)
scaffold0277 (1-170)||(2875-3044)
[»] chr2 (1 HSPs)
chr2 (1-235)||(17991301-17991535)
[»] chr1 (3 HSPs)
chr1 (1-179)||(266501-266679)
chr1 (66-235)||(28125771-28125940)
chr1 (233-280)||(266371-266418)
[»] scaffold1870 (1 HSPs)
scaffold1870 (1-170)||(623-792)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-170)||(9342-9511)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-169)||(61434-61598)
[»] chr4 (7 HSPs)
chr4 (5-169)||(18075626-18075790)
chr4 (65-235)||(18677713-18677883)
chr4 (48-235)||(18697555-18697742)
chr4 (65-235)||(18653631-18653801)
chr4 (65-235)||(18729649-18729819)
chr4 (48-235)||(18722227-18722414)
chr4 (65-182)||(18687820-18687937)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 29272162 - 29271875
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| | ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272162 aactagtaaaattgaaatgatatatacgaatctccattccatagaatctgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 29272063  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29272062 gttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcat 29271963  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagtattatagtct 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29271962 ctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaacaaaagaaatcactatgaaagtattatagtct 29271875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 22023240 - 22023320
Alignment:
Q  156 tgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattcac 236  Q
    |||||||||| ||||||||||||||||||||| | | ||| |||||||||||||| | ||||||||||||||||| |||||    
T  22023240 tgagtgtattaaaatggaaaggatgtttatcggagtctctatcatctagtattttgagcaaggcaagtgaaataacttcac 22023320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 27680820 - 27681107
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27680820 aactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactgaaaaca 27680919  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||||| |||||||| |||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  27680920 cttatcattgaaaatggccttttttctggaggtctcaagtatcttccaagcagtttgcgtgtattgaaatggaaaggatgtttatcgaagtgtctgtcat 27681019  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagtattatagtct 288  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||    
T  27681020 ctagtattttaaacaaggcaagtgaaataacttcacaatgattttgtttcagtcaacaaaagaaatcagtatgaaagtattattgtct 27681107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27696913 - 27696637
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696913 aactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 27696814  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||     
T  27696813 gttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaagggatgtttatcgaagtgtctgtcaa 27696714  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagta 279  Q
    |||||||||||||||||||||||||||||| ||  || | |||||||||||||||||||||||||||| | ||||||||    
T  27696713 ctagtattttaaacaaggcaagtgaaataactt--cagttattttgtttccgtcaacaaaagaaatcagtatgaaagta 27696637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 27609444 - 27609157
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27609444 aactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactgaaaaca 27609345  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||||||||||||||| |||||| ||| |||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  27609344 cttatcattgaaaatggccatttttctggaggtctgaagtatcttccaagcagtttgcgtgtattgaaatggaaaggatgtttatcgaagtgtctgtcat 27609245  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagtattatagtct 288  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||    
T  27609244 ctaatattttaaacaaggcaagtgaaataacttcacaatgattttgtttcagtcaacaaaagaaatcagtatgaaagtattattgtct 27609157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 27716823 - 27716546
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27716823 aactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactgaaaaca 27716724  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||||||||| |||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27716723 cttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcat 27716624  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagta 279  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  27716623 ctaggattttaaacaaggcaagtgaaataacttcacaatgattttgtttccgtcaacaaaa-aaatcagtatgaaagta 27716546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26804325 - 26804559
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| | ||||    
T  26804325 aactagtaaaattgaaatgataaatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaaaaagatgacaaaactgagaaca 26804424  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||||||| | | ||| ||||    
T  26804425 cttatcattgaaaatggacatttttctgaaggtctcaagtatcttccaagcagtttgatagtattgaaatggaaaggatgtttatcggagtctctatcat 26804524  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||||||||| ||||||||||||||||| ||||    
T  26804525 ctagtattttaagcaaggcaagtgaaataacttca 26804559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26648291 - 26648513
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  26648291 aactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 26648390  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||| ||||||||| ||||||| ||  |||| ||||| |||||||| ||||||||||||||||||||||||||  | | ||| ||||    
T  26648391 cttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcagagtctctatcat 26648490  T
Q  201 ctagtattttaaacaaggcaagt 223  Q
    |||||||||||| ||||||||||    
T  26648491 ctagtattttaagcaaggcaagt 26648513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26754259 - 26754481
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  26754259 aactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 26754358  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||| ||||||||| ||||||| ||  |||| ||||| |||||||| ||||||||||||||||||||||||||  | | ||| ||||    
T  26754359 cttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcagagtctctatcat 26754458  T
Q  201 ctagtattttaaacaaggcaagt 223  Q
    |||||||||||| ||||||||||    
T  26754459 ctagtattttaagcaaggcaagt 26754481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 31286411 - 31286645
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  31286411 aactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaatggccttcaagaagatgacaaaacttaaaaca 31286510  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     | |||||||||||||||||||||||  | || |||||| |||| ||||  |||||||| ||||||||||||||||||||||||| | | | ||| ||||    
T  31286511 ctaatcattgaaaatggccatttttccaatggactcaagtatcttccaaacagtttgagagtattgaaatggaaaggatgtttattggagtctctatcat 31286610  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||||||||| ||||||||||||| ||| ||||    
T  31286611 ctagtattttaagcaaggcaagtgaagtaacttca 31286645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26625082 - 26625309
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| | | ||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26625082 aactagtaaaattgaaatgatatatatgaattttccctctatggaatccgtaatagaccagaaaggaaaggccttcaggaagatgacaaaactcaaaaca 26625181  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||| |||| |  |||||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| | | ||| |||     
T  26625182 cttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcggagtctctatcag 26625281  T
Q  201 ctagtattttaaacaaggcaagtgaaat 228  Q
    ||||| |||| |||||||||||||||||    
T  26625282 ctagttttttgaacaaggcaagtgaaat 26625309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26731059 - 26731286
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| | | ||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26731059 aactagtaaaattgaaatgatatatatgaattttccctctatggaatccgtaatagaccagaaaggaaaggccttcaggaagatgacaaaactcaaaaca 26731158  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||| |||| |  |||||| ||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| | | ||| |||     
T  26731159 cttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcggagtctctatcag 26731258  T
Q  201 ctagtattttaaacaaggcaagtgaaat 228  Q
    ||||| |||| |||||||||||||||||    
T  26731259 ctagttttttgaacaaggcaagtgaaat 26731286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27675931 - 27675701
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||| |||||| |||||||||||  |||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | | ||||||    
T  27675931 aactggtaaaactgaaatgatatgtatgaatttgcactccatggaatccgtaatagacaagaaaggaaaggccttcaaaaagatgacaagattgaaaaca 27675832  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||  | |||||||||| ||||||||||||| || | ||| || |    
T  27675831 cttatcattgaaaatggccattgttctaaaggtctcaagcatcttccaagcagtttgaaagcattgaaatgggaaggatgtttatcaaagtctctctcgt 27675732  T
Q  201 ctagtattttaaacaaggcaagtgaaataaa 231  Q
    |||||||||||| ||||||||||||||||||    
T  27675731 ctagtattttaagcaaggcaagtgaaataaa 27675701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27704568 - 27704334
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    ||||||||||||| ||||||| || |||||| | ||||||||||||||| | |||||| | ||||||| |||||||||||||||||||| | | ||||||    
T  27704568 aactagtaaaattcaaatgatgtatatgaattttcactccatggaatccataatagaccaaaaaggaatggccttcaagaagatgacaagattgaaaaca 27704469  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||||||||| |||| ||||||||||| |||| ||||| |||||||  | |||||||||| ||||||||||||| || | ||| || |    
T  27704468 cttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttgaaagcattgaaatgggaaggatgtttatcaaagtctctatcgt 27704369  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||||||||| ||||||||||||||||| ||||    
T  27704368 ctagtattttaagcaaggcaagtgaaataacttca 27704334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28794217 - 28794451
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||     
T  28794217 aactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagattgaaaacg 28794316  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||||||||||||| ||||||||||  |||| ||||| |||||||| ||||||||||     |||||||||||  | | ||||| ||    
T  28794317 cttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttgagagtattgaaattacgtggatgtttatcagagtctctgttat 28794416  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    | |||| ||||| ||||||||||||||||| ||||    
T  28794417 caagtagtttaagcaaggcaagtgaaataacttca 28794451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27591334 - 27591104
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||| |||||| |||||||||||  |||||| | ||||| |||||||| || |||||||||||||||||||||||||| |||||||||| | | ||||||    
T  27591334 aactggtaaaactgaaatgatatgtatgaatttgcactctatggaatctgtaatagacaagaaaggaaaggccttcaaaaagatgacaagattgaaaaca 27591235  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||| |||||||||||||||| |||| ||||||||||| |||| | ||| |||||||  | |||||||||| ||||||||||||| || | ||| || |    
T  27591234 cttattattgaaaatggccattgttctaaaggtctcaagtatcttcgaagcagtttgaaagcattgaaatgggaaggatgtttatcaaagtctctatcgt 27591135  T
Q  201 ctagtattttaaacaaggcaagtgaaataaa 231  Q
    |||||||||||| ||||||||||||||||||    
T  27591134 ctagtattttaagcaaggcaagtgaaataaa 27591104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28788096 - 28788330
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||| ||||  ||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||     
T  28788096 aactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagattgaaaacg 28788195  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||||||||||||| ||||||||||  |||| ||||| |||||||| ||||||||||     |||||||||||  | | ||| | ||    
T  28788196 cttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttgagagtattgaaattacgtggatgtttatcagagtctcttttat 28788295  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |  ||| ||||| ||||||||||||||||| ||||    
T  28788296 catgtagtttaagcaaggcaagtgaaataacttca 28788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 26657834 - 26658064
Alignment:
Q  5 agtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacattta 104  Q
    ||||| ||||||||||||||  |||||   | ||| |||||| || | ||||||  ||| |||||| |||||| |||||||||||| ||||||||  |||    
T  26657834 agtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaatctcaaaactctta 26657933  T
Q  105 tcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctag 204  Q
    ||||||||||||||| ||||||| ||||||  || ||||| ||||| ||||||||  | ||||||||||||||||||   ||||| | ||| |||||| |    
T  26657934 tcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttg 26658033  T
Q  205 tattttaaacaaggcaagtgaaataaattca 235  Q
    ||||| |||||||||||||||||||| ||||    
T  26658034 tatttcaaacaaggcaagtgaaataagttca 26658064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 26763805 - 26764035
Alignment:
Q  5 agtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacattta 104  Q
    ||||| ||||||||||||||  |||||   | ||| |||||| || | ||||||  ||| |||||| |||||| |||||||||||| ||||||||  |||    
T  26763805 agtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaatctcaaaactctta 26763904  T
Q  105 tcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctag 204  Q
    ||||||||||||||| ||||||| ||||||  || ||||| ||||| ||||||||  | ||||||||||||||||||   ||||| | ||| |||||| |    
T  26763905 tcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttg 26764004  T
Q  205 tattttaaacaaggcaagtgaaataaattca 235  Q
    ||||| |||||||||||||||||||| ||||    
T  26764005 tatttcaaacaaggcaagtgaaataagttca 26764035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 27425929 - 27425765
Alignment:
Q  5 agtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacattta 104  Q
    |||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||||    
T  27425929 agtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacacctcaaaacgttta 27425830  T
Q  105 tcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaa 169  Q
    | | |||||||||| ||  |  | || |||||||| |||| |||||||||||||| ||| |||||    
T  27425829 ttactgaaaatggctatcatattcaaagtctcaagtatcttccaagaagtttgagggtaatgaaa 27425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 26885992 - 26886157
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||  ||| |||| ||||  |||||||| ||||    
T  26885992 ggaaagtccttcaagaagatgacaaaactcaaaactcttatcattgaaaatggccatttttccaaaggtccgaagtatcttccaaatagtttgagagtat 26886091  T
Q  165 tgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataa 230  Q
    | |||||||||||||||   ||  | | ||| |||||||||||||| | |||||||||| ||||||    
T  26886092 ttaaatggaaaggatgtacttcagagtctctatcatctagtatttttagcaaggcaagtaaaataa 26886157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 27663459 - 27663347
Alignment:
Q  67 aaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattg 166  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| ||| |||||||| ||||||||||| |||| |||| ||||||||  ||||||    
T  27663459 aaaggcctttaagaagatgaaaaaactcaaaacacttatcattgaaaagggctatttttctaaaggtctcaagtatcttccaaaaagtttgatagtattg 27663360  T
Q  167 aaatggaaaggat 179  Q
    |||||||||||||    
T  27663359 aaatggaaaggat 27663347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 26813352 - 26813525
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    ||||||||||||||||||||||||  | ||| ||| | | | | | |||| ||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  26813352 aactagtaaaattgaaatgatatatctaaatttccccacaaagaattccgagatagattggaatggaaaggccttcaagaagatgacaaaactcaaaaca 26813451  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaa 174  Q
     |||| ||||||||||| || |||||| |||||| ||||||||| || || | |||||| |||||||| |||||    
T  26813452 cttattattgaaaatggtcaattttctaaaggtcccaagcatcttcctagtactttgagagtattgaagtggaa 26813525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 26863494 - 26863686
Alignment:
Q  43 ggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcat 142  Q
    |||| |||| ||||||  ||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||| |||  |     
T  26863494 ggaacccgtaatagactggaatggaaaggccttcaagaagatgaaaaaactcaaaacacttgtcattgaaaatggccatttttctaaaggtcccaaatac 26863593  T
Q  143 ctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    ||  ||||  ||||||| ||||| ||||||||||||| |   || || | ||| |||||| || |||| |||||||||||||| |||| ||||    
T  26863594 ctttcaagttgtttgagagtattaaaatggaaaggatatccttccaagtctctatcatcttgttttttgaacaaggcaagtgatataatttca 26863686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 27216377 - 27216491
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |||  |||| ||||| ||||||||  | |    
T  27216377 ggaaaggccttcacgaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttctaaaggtcccaattatcttccaagtagtttgagatttt 27216476  T
Q  165 tgaaatggaaaggat 179  Q
     ||||||||||||||    
T  27216477 ggaaatggaaaggat 27216491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26825674 - 26825908
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||| | |||||| |||| |||||| ||| ||||| | || | || |||||   ||| |||||||| |||| |||||||||||| |||||||||    
T  26825674 aactagtaaagtcgaaatgctatatatgaatttcccctccaagaaaactgtaatagattggaatggaaaggctttcatgaagatgacaaatctcaaaaca 26825773  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||| ||| |||| |||||||||||| ||||||   || | || ||||| |||||||| |||||||||||| |  | | |   ||| ||| ||| ||||    
T  26825774 cttattattaaaaagggccatttttctaaaggtccagagtacctcccaagtagtttgagagtattgaaatgggataggtatccttcggattctctatcat 26825873  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||||||| ||||||||||||||||||| ||||    
T  26825874 ctagtattttgaacaaggcaagtgaaataagttca 26825908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 25491624 - 25491525
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||| ||  ||||||  ||| ||| ||||||||||||||| ||||||||||||||||    
T  25491624 aactagtaaaattgaaatgatatatatgaatttcccctccatggaattcgaaatagactggaatggagaggccttcaagaagacgacaaaactcaaaaca 25491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 26850568 - 26850688
Alignment:
Q  53 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaa 152  Q
    ||||||| ||| | |||||||||||||||||||||||| ||||||||| ||||| ||||| ||| | |||||||| |||||| |||| |||| || || |    
T  26850568 atagacatgaatgaaaaggccttcaagaagatgacaaatctcaaaacacttatcgttgaagatgacaatttttctaaaggtcccaagtatcttccgagta 26850667  T
Q  153 gtttgagtgtattgaaatgga 173  Q
    ||||||| |||||| ||||||    
T  26850668 gtttgagagtattggaatgga 26850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26960933 - 26961086
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaat-ctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaac 99  Q
    ||||||||||||||||||||||||  ||||| |||| ||| ||| || ||||   ||||| ||| | |||||| ||||||||||||||||| ||||||||    
T  26960933 aactagtaaaattgaaatgatatatttgaattctcc-ctcaatgaaacccgt---agacatgaatgaaaaggcattcaagaagatgacaaatctcaaaac 26961028  T
Q  100 atttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttg 157  Q
    | |||||||||| || ||| |||||||| |||||| |||| |||| ||||| ||||||    
T  26961029 acttatcattgagaaaggcaatttttctaaaggtcccaagtatcttccaagtagtttg 26961086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 27602965 - 27602795
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    ||||||||| | |||||||||||||| ||||||||| |||||||||||||||| || ||||||  |||||   |  |||| ||||| ||||||||  | |    
T  27602965 ggaaaggccatgaagaagatgacaaatctcaaaacacttatcattgaaaatggtcagttttctagaggtcctgactatcttccaagtagtttgagatttt 27602866  T
Q  165 tgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
      |||||||| || |||   ||||| | ||| |||||| ||||||| ||||||||||||||||||||||||    
T  27602865 gcaaatggaatggttgtccttcgaagtctctatcatcttgtattttgaacaaggcaagtgaaataaattca 27602795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 27529548 - 27529444
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    ||||| |||||| ||||||||||||| |||||||||||||| | |||||||||||||  |||| || ||||| || |||| ||||| |||||||| |||     
T  27529548 ggaaatgccttcgagaagatgacaaacctcaaaacatttattactgaaaatggccatcattctaaaagtctcgagtatcttccaagtagtttgagggtaa 27529449  T
Q  165 tgaaa 169  Q
    |||||    
T  27529448 tgaaa 27529444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 31286666 - 31286709
Alignment:
Q  227 ataaattcacaatgattttgtttccgtcaacaaaagaaatcact 270  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  31286666 ataaattcacaataattttgttttcgtcaacaaaagaaatcact 31286709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 26648546 - 26648580
Alignment:
Q  227 ataaattcacaatgattttgtttccgtcaacaaaa 261  Q
    |||||||||||||||||||||||||||||||||||    
T  26648546 ataaattcacaatgattttgtttccgtcaacaaaa 26648580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 26754514 - 26754548
Alignment:
Q  227 ataaattcacaatgattttgtttccgtcaacaaaa 261  Q
    |||||||||||||||||||||||||||||||||||    
T  26754514 ataaattcacaatgattttgtttccgtcaacaaaa 26754548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 26979299 - 26979406
Alignment:
Q  53 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaa---aatggccatttttctgaaggtctcaagcatctaccaa 149  Q
    ||||||| ||| | |||||| ||||||||||||||||| ||||||||| |||||||| ||    ||||| |||||||| |||||| || | |||| ||||    
T  26979299 atagacatgaatgaaaaggcattcaagaagatgacaaatctcaaaacacttatcattcaagctgatggcaatttttctaaaggtcccaggtatcttccaa 26979398  T
Q  150 gaagtttg 157  Q
    | ||||||    
T  26979399 gtagtttg 26979406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 26938962 - 26939020
Alignment:
Q  68 aaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttc 126  Q
    ||||||||||||||||||| ||| || |||||| |||||||| ||| ||| ||||||||    
T  26938962 aaggccttcaagaagatgaaaaatcttaaaacacttatcattaaaagtggtcatttttc 26939020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 25484978 - 25485019
Alignment:
Q  76 caagaagatgacaaaactcaaaacatttatcattgaaaatgg 117  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||    
T  25484978 caagaagatgacaaatctcaaaacacttatcattgaagatgg 25485019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 25512809 - 25512845
Alignment:
Q  76 caagaagatgacaaaactcaaaacatttatcattgaa 112  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  25512809 caagaagatgacaaatctcaaaacacttatcattgaa 25512845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 26144787 - 26144823
Alignment:
Q  76 caagaagatgacaaaactcaaaacatttatcattgaa 112  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  26144787 caagaagatgacaaatctcaaaacacttatcattgaa 26144823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 15245 - 15399
Alignment:
Q  124 ttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagt 223  Q
    |||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  15245 ttctaaaggtctcaagtatcttccaagcagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctaggattttaaacaaggcaagt 15344  T
Q  224 gaaataaattcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagta 279  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  15345 gaaataacttcacaatgattttgtttccgtcaacaaaa-aaatcagtatgaaagta 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12007 - 11773
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||| |||   ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||     
T  12007 aactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagactgaaaacg 11908  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     |||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||   | |||||||||||  | | ||| | ||    
T  11907 cttatcattgaaaatggccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaattacatggatgtttatcagagtctctattat 11808  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |  ||| ||||| ||||||||||||||||| ||||    
T  11807 catgtagtttaagcaaggcaagtgaaataacttca 11773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 3044 - 2875
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| |||||| ||| |||   ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||     
T  3044 aactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagactgaaaacg 2945  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaat 170  Q
     ||||||||||||||| |||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||    
T  2944 cttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 2875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17991535 - 17991301
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||||||||||||||||| | |||| || | |||||| ||||||| | || |  ||| |||||||||||||||||||||| |||||||||||||    
T  17991535 aactagtaaaattgaaatgatatatacgaatttcgattccatgaaatccgtaacagtctggaatggaaaggccttcaagaagatgaaaaaactcaaaaca 17991436  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcat 200  Q
     ||||||||||||||| ||||||||||||||||| |||| |||| ||||  |||||||| |||||||||||||||||||||   || || | ||| ||||    
T  17991435 cttatcattgaaaatgaccatttttctgaaggtcccaagtatcttccaaatagtttgagagtattgaaatggaaaggatgtccttcaaagtctctatcat 17991336  T
Q  201 ctagtattttaaacaaggcaagtgaaataaattca 235  Q
    || || |||  || |||||||||||||||| ||||    
T  17991335 cttgtttttcgaataaggcaagtgaaataatttca 17991301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 266679 - 266501
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||||||| ||||||||||||| |||||| ||||||| |||||| | || |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  266679 aactagtaaagttgaaatgatatatatgaatttccactcgatggaacctgtaatagaccagaaaggaaaggccttcaagaagatgacaaatctcaaaaca 266580  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaaaggat 179  Q
     || ||||||||||||| ||||||||| ||||||| ||| | || | ||| |||||||  |||||||||||||||||||    
T  266579 cttgtcattgaaaatgggcatttttctaaaggtctgaagtaccttcgaagcagtttgaaagtattgaaatggaaaggat 266501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 28125940 - 28125771
Alignment:
Q  66 gaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtatt 165  Q
    |||| ||||||||||||||| |||| || |||||| |||| ||  ||||||| || || ||  || ||| |||| |||| ||||| | |||||| |||||    
T  28125940 gaaaagccttcaagaagatgtcaaatcttaaaacacttattataaaaaatggtcaattctccaaaagtcccaagtatcttccaagtactttgagagtatt 28125841  T
Q  166 gaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    || |||| |||||| |    |||| | ||| ||||||||| |||| ||||||||||||||||||| ||||    
T  28125840 gatatgggaaggatataatgcgaagtctctatcatctagttttttgaacaaggcaagtgaaataagttca 28125771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 266418 - 266371
Alignment:
Q  233 tcacaatgattttgtttccgtcaacaaaagaaatcactctgaaagtat 280  Q
    ||||||||||||||||| ||||||||||| |||||||| ||| |||||    
T  266418 tcacaatgattttgtttacgtcaacaaaaaaaatcactatgagagtat 266371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 623 - 792
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||| ||||||||||||||||| |||||| ||| |||   ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||     
T  623 aactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagactgaaaacg 722  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaat 170  Q
     ||||||||||||||| |||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||    
T  723 cttatcattgaaaatgaccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9342 - 9511
Alignment:
Q  1 aactagtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaaca 100  Q
    |||||| ||||||||||||||||| |||||| ||| |||   ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||     
T  9342 aactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagactgaaaacg 9441  T
Q  101 tttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaat 170  Q
     ||||||||||||||| |||||||||| ||||||||||| |||| ||||| |||||||| ||||||||||    
T  9442 cttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 9511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 61434 - 61598
Alignment:
Q  5 agtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacattta 104  Q
    |||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||||    
T  61434 agtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacacctcaaaacgttta 61533  T
Q  105 tcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaa 169  Q
    | | |||||||||| ||  |  | || |||||||| |||| |||||||||||||| ||| |||||    
T  61534 ttactgaaaatggctatcatattcaaagtctcaagtatcttccaagaagtttgagggtaatgaaa 61598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 18075626 - 18075790
Alignment:
Q  5 agtaaaattgaaatgatataaatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacattta 104  Q
    |||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||||    
T  18075626 agtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacacctcaaaacgttta 18075725  T
Q  105 tcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaa 169  Q
    | | |||||||||| ||  |  | || |||||||| |||| |||||||||||||| ||| |||||    
T  18075726 ttactgaaaatggctatcatattcaaagtctcaagtatcttccaagaagtttgagggtaatgaaa 18075790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 18677883 - 18677713
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    |||||| ||||||||||||||||||| ||||||||| |||| |||||||||| |  ||||||| ||||||||||| |||| ||||| |||||||| ||||    
T  18677883 ggaaagaccttcaagaagatgacaaatctcaaaacacttattattgaaaatgtctctttttctaaaggtctcaagtatcttccaaggagtttgagagtat 18677784  T
Q  165 tgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||||||| |||||||  ||  | | ||| ||||||| |||||    ||||||||||||||||| ||||    
T  18677783 tgaaatggaatggatgttgttcagagtctctatcatctattatttgttgcaaggcaagtgaaataatttca 18677713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 18697742 - 18697555
Alignment:
Q  48 ccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctacc 147  Q
    |||| ||||||  ||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||| |  ||||||| ||| || |||| |||| ||    
T  18697742 ccgtaatagactggaatggaaaggccttcaagaagatgacaaatctcaaaacacttattattgaaaatgtctctttttctaaagatcccaagtatcttcc 18697643  T
Q  148 aagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    ||| |||||||| |||||||||| ||| |||||||   |  | | ||| |||||| ||||||  | ||||||||||||||||| ||||    
T  18697642 aagcagtttgagagtattgaaattgaatggatgttctacagagtctctatcatcttgtatttgcagcaaggcaagtgaaataatttca 18697555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 18653801 - 18653631
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||| |||||| |  ||||||| ||| || |||| |||| ||||| |||||||| ||||    
T  18653801 ggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtat 18653702  T
Q  165 tgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||| ||| |||||||  ||  | | ||| ||||||| |||||    ||||||||||||||||| ||||    
T  18653701 tgaaattgaatggatgttcttcagagtctctatcatctattatttgctgcaaggcaagtgaaataatttca 18653631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 18729819 - 18729649
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    |||||||| ||||||||||||||||| ||||||||| |||| ||| |||||| | |||||||| ||| || |||| |||| ||||| |||||||| ||||    
T  18729819 ggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctatttttctaaagatcccaagtatcttccaagcagtttgagagtat 18729720  T
Q  165 tgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    |||||| ||| |||||||  ||  | | ||| ||||||  ||||||   ||||||||||||||||| ||||    
T  18729719 tgaaattgaatggatgttcttcagagtctctatcatcttttattttctgcaaggcaagtgaaataatttca 18729649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 18722414 - 18722227
Alignment:
Q  48 ccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctacc 147  Q
    |||| ||||||  ||| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||| |  ||||||| ||| || |||| |||| ||    
T  18722414 ccgtaatagactggaatggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttcc 18722315  T
Q  148 aagaagtttgagtgtattgaaatggaaaggatgtttatcgaattgtctgtcatctagtattttaaacaaggcaagtgaaataaattca 235  Q
    ||| |||||||| |||||||||| |||  ||||||  ||    | ||| ||||||| |||||  | ||||||||||||||||| ||||    
T  18722314 aagcagtttgagagtattgaaattgaatcgatgttcctcagtgtctctatcatctattatttgcagcaaggcaagtgaaataatttca 18722227  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 18687937 - 18687820
Alignment:
Q  65 ggaaaggccttcaagaagatgacaaaactcaaaacatttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtat 164  Q
    |||||||| ||||||||||||||||| ||||||||| |||| ||| |||||| |  |||| || ||| || |||| |||| ||||| |||||||| ||||    
T  18687937 ggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaaaatgtctcttttactaaagatcccaagtatcttccaagcagtttgagagtat 18687838  T
Q  165 tgaaatggaaaggatgtt 182  Q
    |||||| ||| |||||||    
T  18687837 tgaaattgaatggatgtt 18687820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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