View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_low_18 (Length: 269)
Name: NF11481_low_18
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 5441427 - 5441165
Alignment:
| Q |
12 |
atgaattccaatgtgtagaaataatgacctgatcaaggatcaatgaatattgaaatacacgattccaaaacttgatcaagctaaggaccccaattcaagt |
111 |
Q |
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| T |
5441427 |
atgaattccaatgtgtagaaataatgagttgatcaaggatcaatgaatattgaaatacacgattccaaaacttgatcaagctaaggaccccaattcaagt |
5441328 |
T |
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| Q |
112 |
tctttggaaattgcaaaatctt-----cctctgcccaattatttgtgtattttccatacatttccccattccccaatttttcttcaataagacttttgat |
206 |
Q |
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| T |
5441327 |
tctttggaaattgcaaaatcttagcttcctctgcccaattatttgtgtattttccatacatttccccattccccaatttttcttcaataagacttttgat |
5441228 |
T |
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| Q |
207 |
atagaagaaatacccctgttttctttgcctataaatacgagttcttttttatcaatcacatcc |
269 |
Q |
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| T |
5441227 |
atagaagaaatacccctgttttctttgcctataaatacgagttcttttttatcaatcacatcc |
5441165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5444830 - 5444879
Alignment:
| Q |
12 |
atgaattccaatgtgtagaaataatgacctgatcaaggatcaatgaatat |
61 |
Q |
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| T |
5444830 |
atgaattcctatgtgtagaaataatgagttgatcaaggatcaatgaatat |
5444879 |
T |
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