View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_low_19 (Length: 251)
Name: NF11481_low_19
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48645594 - 48645834
Alignment:
| Q |
1 |
aacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645594 |
aacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgacca |
48645693 |
T |
|
| Q |
101 |
cgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645694 |
cgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttattt |
48645793 |
T |
|
| Q |
201 |
cagatacccattttccccactttctcaatctcacacctttg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645794 |
cagatacccattttccccactttctcaatctcacacctttg |
48645834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 48654007 - 48654247
Alignment:
| Q |
1 |
aacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgaccg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654007 |
aacctctcgaatttgttgtggtgtaagcgaattgttagaaactgcattgatatccaaattgagaggtgtatcaaggaaattgaaatttgcatgacgacca |
48654106 |
T |
|
| Q |
101 |
cgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654107 |
cgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttattt |
48654206 |
T |
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| Q |
201 |
cagatacccattttccccactttctcaatctcacacctttg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654207 |
cagatacccattttccccactttctcaatctcacacctttg |
48654247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 3573912 - 3573750
Alignment:
| Q |
64 |
aggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatcct |
163 |
Q |
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|||||||| | ||||||||||| |||||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||||| |
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| T |
3573912 |
aggtgtattagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcct |
3573813 |
T |
|
| Q |
164 |
aaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
226 |
Q |
| |
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||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
3573812 |
aaccatattctctcacgactatttggaagcctaatttcagatacccattttccccattttctc |
3573750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 3551496 - 3551332
Alignment:
| Q |
62 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
161 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| |||| || ||||||||||| || |||||||||||| | ||||||||||| || |||||||||| |
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| T |
3551496 |
agaggtgtgttagggaaattgaaacttgcatgaggaccacgtagacaataaagggctgcatcaaatgctcttgctgctttctcttgtgtgtcatatgatc |
3551397 |
T |
|
| Q |
162 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
226 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||| || |||||||||||||||||||| |||||| |
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| T |
3551396 |
ctaaccatattctctccctactatttggaagcctaatctcagatacccattttccccaatttctc |
3551332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 3589206 - 3589042
Alignment:
| Q |
62 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
161 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
3589206 |
agaggtgtgttagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
3589107 |
T |
|
| Q |
162 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
226 |
Q |
| |
|
||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
3589106 |
ctaaccatattctctccctactatttggaagcctaatttcagatacccattttccccattttctc |
3589042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 3562670 - 3562506
Alignment:
| Q |
62 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
161 |
Q |
| |
|
|||||||| | | ||||||||||| | |||||| |||| || |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
3562670 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
3562571 |
T |
|
| Q |
162 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttccccactttctc |
226 |
Q |
| |
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||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
3562570 |
ctaaccatattctctccctactatttggaagcctaatttcagatacccattttccccattttctc |
3562506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 10025353 - 10025200
Alignment:
| Q |
62 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccgcgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
161 |
Q |
| |
|
|||||||||| | ||||||||||| | |||||| |||| || |||||||| || || |||||||||||| |||||||||| || || |||| ||||| |
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| T |
10025353 |
agaggtgtattagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatc |
10025254 |
T |
|
| Q |
162 |
ctaaccatattctttcacgactatttggtagccttatttcagatacccattttc |
215 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
10025253 |
ctaaccatattctctcacgactatttggaagcctaatttcagatacccattttc |
10025200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48569929 - 48569990
Alignment:
| Q |
1 |
aacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattga |
62 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48569929 |
aacctctcgaatttgttgtggtataagtgaattgttagaaactgcattgatatccaaattga |
48569990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8146089 - 8146150
Alignment:
| Q |
1 |
aacctctcgaatttgttgtggtgtaagtgaattgttagaaactgcattgatatccaaattga |
62 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8146089 |
aacctctcgaatttgttgtggtataagtgaattgttagaaactgcattgatatccaaattga |
8146150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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