View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_low_2 (Length: 634)
Name: NF11481_low_2
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 44901020 - 44901636
Alignment:
| Q |
1 |
acaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcgaaacaag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44901020 |
acaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcgaaacaag |
44901119 |
T |
|
| Q |
101 |
gtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtatatgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44901120 |
gtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtatatgaaga |
44901219 |
T |
|
| Q |
201 |
cggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgactggaacacccgtcaagtctcacttt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44901220 |
cggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaaatggtgtggatatcttgactggaacacccgtcaagtctcacttt |
44901319 |
T |
|
| Q |
301 |
gctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaagcgcattggtgagttcctatataattcctcgtgtttctttggtt |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44901320 |
gctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatccacaaaaacgcattggtgagttcctatataattcttcgtgtttctttggtt |
44901419 |
T |
|
| Q |
401 |
tcacttgtgttactgcaannnnnnnnnnnnnnnnnnnnagtgcttcaataaaattattattcactgtaatttgtgaaatttcccgtgattttaaacataa |
500 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44901420 |
tcacttgtgttactgcaatttttttaaaaactttttttagtgcttcaataaaattattattcactgtaatttgtgaaatttcccgtgattttaaacataa |
44901519 |
T |
|
| Q |
501 |
acttcaactaacatcttttaacttcagtcaaaaatctaacatctctgtattttatgtagtaacttaaaaatagaaatcaagtgggattgtattacataaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44901520 |
acttcaactaacatcttttaacttcagtcaaaaatctaacatctctgtattttatgtagtaacttaaaaatagaaatcaagtgggattgtatcacataaa |
44901619 |
T |
|
| Q |
601 |
tggttactcttccaact |
617 |
Q |
| |
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||||||||||||||||| |
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| T |
44901620 |
tggttactcttccaact |
44901636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 44892376 - 44892742
Alignment:
| Q |
10 |
aaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcgaaacaaggtttctttg |
109 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||| | ||| | |||||| ||||||||||||||||||||||| ||| |||| | ||||||||||||||| |
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| T |
44892376 |
aaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtgaacaaggtttctttg |
44892475 |
T |
|
| Q |
110 |
attggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtatatgaagacggtgatgc |
209 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| || | | || |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44892476 |
attggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtatatgaagacggtgatgc |
44892575 |
T |
|
| Q |
210 |
tcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgactggaacacccgtcaagtctcactttgctagacca |
309 |
Q |
| |
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|| ||| ||||| || || | |||||||||||||||||||||||| ||| |||||||||| | |||||||||| || |||| ||||||| |||| |
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| T |
44892576 |
tcgctctgctcttgttactgtccttcaatcactaaaccatgctaaagaaggtttggatatcttaaatggaacacccatcgcgtcttactttgcacgaccc |
44892675 |
T |
|
| Q |
310 |
aaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaagcgcattggtgagttcctat |
376 |
Q |
| |
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|| |||||||| |||||||| | |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
44892676 |
aattggcgcagtgtctacaataggattgcaaataatcatccacaaaaacgcattggtgagttcctat |
44892742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 44917779 - 44918141
Alignment:
| Q |
10 |
aaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcgaaacaaggtttctttg |
109 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||||| |||| ||| ||||||| | |||||||||||| ||||| | |||| |||| |||| |
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| T |
44917779 |
aaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagagaacagggttcatttg |
44917878 |
T |
|
| Q |
110 |
attggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtatatgaagacggtgatgc |
209 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| || | |||| ||||||||||| | |||| | | | |||||||| |||||||| |||||||| |
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|
| T |
44917879 |
attggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgtttatgaagagggtgatgc |
44917978 |
T |
|
| Q |
210 |
tcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgactggaacacccgtcaagtctcactttgctagacca |
309 |
Q |
| |
|
|| ||| |||||||||||||||| |||||||| || |||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||| ||| |
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|
| T |
44917979 |
tcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatcgtctctggaacacgcgtcaagtctcactttgctaaacct |
44918078 |
T |
|
| Q |
310 |
aaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaagcgcattggtgagttc |
372 |
Q |
| |
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|| ||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
44918079 |
aattggcgtagtgtctacaagcgcattgcacttaatcatccacaaacacgcgttggtgagttc |
44918141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 39985716 - 39985780
Alignment:
| Q |
286 |
gtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatcc |
350 |
Q |
| |
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|||| |||||| ||||||| ||| || ||||||| |||||||| |||||||||||||||||||| |
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| T |
39985716 |
gtcatgtctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatcc |
39985780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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