View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_low_5 (Length: 498)
Name: NF11481_low_5
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 52544303 - 52544672
Alignment:
| Q |
1 |
tatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaattgtgtgcttg |
100 |
Q |
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| T |
52544303 |
tatcgtgcatggtacatggttggatgttcctgacttttcttgcctttgaatatgttctgttatggcttgaaatattgattcttcttgaattgtgtgcttg |
52544402 |
T |
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| Q |
101 |
tgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctcatactagttatg |
200 |
Q |
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| T |
52544403 |
tgcaaaacttttaaattgtgtgtttgtgcaatgtgcatgcttcttttgttttcaaagaaataattttgtccaagaattatgttctctcatactagttatg |
52544502 |
T |
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| Q |
201 |
ctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaagcacaaatgggtaactcaaataatctcttttttaattt |
300 |
Q |
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| T |
52544503 |
ctctattgggatttgaaggaaccttgccaatttctcctcaatcgtcgttatctcacaagcaagcacaaatgggtaactcaaataatctcttttttaattt |
52544602 |
T |
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| Q |
301 |
tatcaaccaattgtatgtgtgtgtgtttttattcttgattatccttccttgttaagaccatttaacttaa |
370 |
Q |
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| T |
52544603 |
tatcaaccaattgtatgtgtgtgtatttttattcttgattatccttccttgttaagaccatttaacttaa |
52544672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 52544688 - 52544814
Alignment:
| Q |
354 |
aagaccatttaacttaaatgaatgtaagtttcctctatgtttgtaatgttgaacatgtacaattaatgtgttatgtgcagtttcatgaatttattggcat |
453 |
Q |
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| T |
52544688 |
aagaccatttaacttaaatgaatgtaagtttcctctatgtttgtaatgttgaacatgtacaattaatgtgttatgtgcagtttcatgaatttattggcat |
52544787 |
T |
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| Q |
454 |
taacatgcactccgtctatgtctatct |
480 |
Q |
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| T |
52544788 |
taacatgcaccccgtctatgtctatct |
52544814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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