View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11481_low_7 (Length: 478)
Name: NF11481_low_7
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 315559 - 316016
Alignment:
| Q |
8 |
agatggacatcacacgatgcactatgtttccaaatgattggagcgtgttctctagacggaatgcaatagtgaatttgttatgtatgatttcatcaagaca |
107 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
315559 |
agattgacatgacacgatgcactatgtttccaaatgattggagcgtgttctctagacggaatgcaattgtgaatttgttatgtatgatttcatcaagaca |
315658 |
T |
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| Q |
108 |
tgagcattgcaccgtacgtacttttaatcttatccttcatatgcaaggcaaatgttttccctttcacaaggacaaacactcatggcatgcatgttttatt |
207 |
Q |
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| T |
315659 |
tgagcattgcaccgtacgtacttttaatcttatccttcatatgcaaggcaaatgtttgccctttcacaaggacaaacactcatggcatgcatgttttatt |
315758 |
T |
|
| Q |
208 |
atgactgtatggtcccattcagtttattccttaaatttagcatgagttaggggttatgaataagtaaatatttttggttgtaaatgccatggatgcatgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
315759 |
atgactgtatggtcccattcagtttattccttaaatttagcatgagttaggggttatgaataagtaaatatttttggttgtaaatgccatggatgcatgc |
315858 |
T |
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| Q |
308 |
tacggaatcataaactgcatgccgcagaaccattgacattccaagcagcttctgcatactctgactctgagagaaagttacagaacctgattctttcctt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
315859 |
tacggaatcataaactgcatgccgcagaaccattgacattccaagcagcttctgcatactctgactctgagagaaagttacagaacctgattctttcctt |
315958 |
T |
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| Q |
408 |
ttgggaaatacacctcatgttgtttgatgcaaaccatgttcttcctctatttattttt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
315959 |
ttgggaaatacacctcatgttgtttgatgcaaaccatgttcttcctctatttattttt |
316016 |
T |
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