View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11481_low_9 (Length: 408)
Name: NF11481_low_9
Description: NF11481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11481_low_9 |
 | |
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| [»] scaffold1598 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 41751299 - 41750973
Alignment:
| Q |
15 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacactcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751299 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacattcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
41751200 |
T |
|
| Q |
115 |
gactatttccaataaacatagagtaataaatgtaaaaagaatggcagattctttttatgtgaatgtatagggaggggaagttcaacagacgttgctcttc |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41751199 |
gactatttccgataaacatagagtaataaatgtaaaaagaatggcacattctttttatgtgaatgtatagggaggggaagtttaacagacgttgctcttc |
41751100 |
T |
|
| Q |
215 |
attgtttatgtgtagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751099 |
attgtttatgtgtagtactactttctcatcaattaaaagcatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
41751000 |
T |
|
| Q |
315 |
acacgcatggttacaacatgattcttc |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41750999 |
acacgcatggttacaacatgattcttc |
41750973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 41791591 - 41791510
Alignment:
| Q |
227 |
tagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
41791591 |
tagtactactttctcatcaattaaaagcatttgaagactacttattattggactttggtattctccttattgatattccatt |
41791510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 41750958 - 41750923
Alignment:
| Q |
359 |
catgatgtctaactgatgtgtgttggatgtatatat |
394 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
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|
| T |
41750958 |
catgatggctaactgatgtgtgttggatgtatatat |
41750923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 38971827 - 38971793
Alignment:
| Q |
227 |
tagtactactttctcatcaattaaaaccatttgaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
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| T |
38971827 |
tagtactactttctcatcaattaaaagcatttgaa |
38971793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 10647045 - 10647371
Alignment:
| Q |
15 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacactcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10647045 |
ggcataatatgtgactgaatatttataagagtatttatatgactttatacattcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
10647144 |
T |
|
| Q |
115 |
gactatttccaataaacatagagtaataaatgtaaaaagaatggcagattctttttatgtgaatgtatagggaggggaagttcaacagacgttgctcttc |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
10647145 |
aactattttcaataaacatagagtaataaatgtaaaaagaatgacacattctttttatgtgaatgtatagggaggggaagtttaacggacgttgctcttc |
10647244 |
T |
|
| Q |
215 |
attgtttatgtgtagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10647245 |
attgtttatgtgtagtactactttctcatcaattaaaagcatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
10647344 |
T |
|
| Q |
315 |
acacgcatggttacaacatgattcttc |
341 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
10647345 |
acatgcatggttacaacatgattcttc |
10647371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 10647385 - 10647419
Alignment:
| Q |
360 |
atgatgtctaactgatgtgtgttggatgtatatat |
394 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
10647385 |
atgatggctaactgatgtgtgttggatgtatatat |
10647419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 5169668 - 5169341
Alignment:
| Q |
15 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacactcgtaatcctttaggtatgacaga-caaacaaacaaatgtaccaacat |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5169668 |
ggcataatatatgactgaatatttataagggtatttatatgactttatatattcgtaatcctttaggtatgacagaacaaacaaacaaatgtaccaacat |
5169569 |
T |
|
| Q |
114 |
agactatttccaataaacatagagtaataaatgtaaaaagaatggcagattctttttatgtgaatgtatagggaggggaagttcaacagacgttgctctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
5169568 |
agactatttccaataaacatagagtaataaatgtaaaaagaatagcacattctttttatgtgaatgtatagggagaggaagtttaacaaacgttgctctt |
5169469 |
T |
|
| Q |
214 |
cattgtttatgtgtagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccattatcta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5169468 |
cattgtttatgtgtagtactactttctcatcaattaaaagcatttgaaggctacttattattggactttgttattctccttattgctattccattatcta |
5169369 |
T |
|
| Q |
314 |
tacacgcatggttacaacatgattcttc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5169368 |
tacacgcatggttacaacatgattcttc |
5169341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 5169326 - 5169292
Alignment:
| Q |
360 |
atgatgtctaactgatgtgtgttggatgtatatat |
394 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5169326 |
atgatgtctgactgatgtgtgttggatgtatatat |
5169292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1598 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: scaffold1598
Description:
Target: scaffold1598; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 886 - 563
Alignment:
| Q |
15 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacactcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
886 |
ggcataatatatgactgaatatttataagggtatttatatgactttattcattcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
787 |
T |
|
| Q |
115 |
gactatttccaataaacatagagtaataaatgtaaaaagaatggcagattctttttatgtgaatgtatagggaggggaagttcaacagacgttgctcttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
786 |
gactatttccaataaacatagagtaataaatgtaaaaagaat---acattctttatatgtgaatgtatagggaggggaagtttaacagacgttgctcttc |
690 |
T |
|
| Q |
215 |
attgtttatgtgtagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
689 |
attgtttatgtgtagttctactttctcatcaattaaaagcatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
590 |
T |
|
| Q |
315 |
acacgcatggttacaacatgattcttc |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
589 |
acacgcatggttacaacatgattcttc |
563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1598; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 394
Target Start/End: Complemental strand, 548 - 513
Alignment:
| Q |
359 |
catgatgtctaactgatgtgtgttggatgtatatat |
394 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
548 |
catgatggctaactgatgtgtgttggatgtatatat |
513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 48761946 - 48761623
Alignment:
| Q |
15 |
ggcataatatgtgactgaatatttataagggtatttatatgactttatacactcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48761946 |
ggcataatatatgactgaatatttataagggtatttatatgactttattcattcgtaatcctttaggtatgacagacaaacaaacaaatgtaccaacata |
48761847 |
T |
|
| Q |
115 |
gactatttccaataaacatagagtaataaatgtaaaaagaatggcagattctttttatgtgaatgtatagggaggggaagttcaacagacgttgctcttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48761846 |
gactatttccaataaacatagagtaataaatgtaaaaagaat---acattctttatatgtgaatgtatagggaggggaagtttaacagacgttgctcttc |
48761750 |
T |
|
| Q |
215 |
attgtttatgtgtagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48761749 |
attgtttatgtgtagtgctactttctcatcaattaaaagcatttgaaggctacttattattggactttgttattctccttattgctattccattatctat |
48761650 |
T |
|
| Q |
315 |
acacgcatggttacaacatgattcttc |
341 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48761649 |
acacgcatggttacaacatgattcttc |
48761623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 47762171 - 47762254
Alignment:
| Q |
227 |
tagtactactttctcatcaattaaaaccatttgaaggctacttattattggactttgttattctcc--ttattgctattccatt |
308 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
47762171 |
tagtactcctttgtcatcaattaaaagcatttgaagactacttattattggactttggtattctccaattattgctattccatt |
47762254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 48761610 - 48761576
Alignment:
| Q |
360 |
atgatgtctaactgatgtgtgttggatgtatatat |
394 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48761610 |
atgatgtctgactgatgtgtgttggatgtatatat |
48761576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 17723770 - 17723853
Alignment:
| Q |
69 |
gtaatcctttaggtatgacagacaaacaaacaaatgtaccaacatagactatttccaataaacatagagtaataaatgtaaaaa |
152 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17723770 |
gtaatcctttaggtatggcagacaaacaaacaaatgtataaacatagactattctcaataaacatagagtaataaatgtaaaaa |
17723853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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