View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_high_10 (Length: 499)
Name: NF11482_high_10
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 36670613 - 36670868
Alignment:
| Q |
16 |
acttattagtaaacttgagggnnnnnnntcaatcatctataattcagctgataaagacttcacctagccttccttcagttgggtggaatctcgcctaacc |
115 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
36670613 |
acttgttagtaaacttgagggaaaaaaatcaatcatctataattcagctgataaaggcttcacctagccttccttcgattggatggaatctcacctaacc |
36670712 |
T |
|
| Q |
116 |
tctaattatctatatgacgatttcagctaacaagatgattatttttaggtgaaaacaattgctccattgtgttgtttttatcaatttatctttaagcgat |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| || |
|
|
| T |
36670713 |
tctaattgtctatatgacgatttcagctaacaagataattatttttaggtgaaaacaattgctcaattgtgttgtttttatcaatttgtctttgagcaat |
36670812 |
T |
|
| Q |
216 |
gagatgattcaacatatttgaatcggctacgcatgaacaatgtcatgattacacct |
271 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
36670813 |
gagatgattcaacatatttgaaccggctgcgcatgaacaatgtcatgattacacct |
36670868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 353 - 487
Target Start/End: Original strand, 36670868 - 36671002
Alignment:
| Q |
353 |
tcaatcttccaacagtaatccttcttttccccaactaatccagaaatttcacctgcttgatggttggatgttcttcctttataaattatccaaataagtt |
452 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36670868 |
tcaatcttccaatagtaatccttcttttccccaactaatcccgaaatttcacctgcttgatggttggatgttcttcctttataaattatccaaataagtt |
36670967 |
T |
|
| Q |
453 |
agatgaacttatcattcttatgtcttccttgttca |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36670968 |
agatgaacttatcattcttatgtcttccttgttca |
36671002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University