View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_high_12 (Length: 492)
Name: NF11482_high_12
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 17366136 - 17365922
Alignment:
| Q |
15 |
tgaaaagttgtagatgattcactcaaacaagttctaaacaaaatgagaaattaaaaacatagagatgtaatgaaccattagcaaacctaaatcattgtca |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17366136 |
tgaaaagttgtagataattcactcaaacaaattttaaacaaaatgagaaattaaaaacatagagatgtaatgaaccattagcaaacctgaatcattgtct |
17366037 |
T |
|
| Q |
115 |
agaaccatcatatgttcaaatta-----cttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgtttatgactatat |
209 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
17366036 |
agaaccatcaaatgttcaaatcaaattgcttctttagattcctccacacttttcattgtaa-aattgtgtttaatcttctgctcttgtttatgattatat |
17365938 |
T |
|
| Q |
210 |
catactcaatctcaga |
225 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17365937 |
catactcaatctcaga |
17365922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 17350320 - 17350115
Alignment:
| Q |
15 |
tgaaaagttgtagatgattcactcaaacaagttctaaacaaaatgagaaattaaaaacatagagatgtaatgaaccattagcaaacctaaatcattgtca |
114 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
17350320 |
tgaaaaattgtagataattcactcaaacaaattcgaaacaaaataagaaattaaaa-catagagatgtaatgaaccattagcaaacctgaatcattatct |
17350222 |
T |
|
| Q |
115 |
agaaccatcatatgttcaaatta-----cttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgtttatgactatat |
209 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| | ||||||| |
|
|
| T |
17350221 |
agaaccatcaaatgttcaaatcaaattgcttctttagattcttcaacacttttcattgtaacaattgtgattaatcttttgttcttgtttttaactatat |
17350122 |
T |
|
| Q |
210 |
catactc |
216 |
Q |
| |
|
||||||| |
|
|
| T |
17350121 |
catactc |
17350115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 51699948 - 51700150
Alignment:
| Q |
15 |
tgaaaagttgtagatgattcactcaaacaagttctaaacaaaatgagaaat-taaaaacatagagatgtaatgaaccattagcaaacctaaatcattgtc |
113 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
51699948 |
tgaaaagttgtagaaaattctctcaaacaaattagaaacaaaatgagaaatctaaaaacatagagatgtaatgaaccattagcaaacccaa-tcattgtc |
51700046 |
T |
|
| Q |
114 |
aagaaccatcatatgttcaaattacttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgtttatgactatatcata |
213 |
Q |
| |
|
| |||||||| | |||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
51700047 |
taaaaccatcaaactttcaaattgcttctttaacttcttcaacacttttcattgtaacaattgtgattaatcttctgcttgtgtttatgactagatcata |
51700146 |
T |
|
| Q |
214 |
ctca |
217 |
Q |
| |
|
|||| |
|
|
| T |
51700147 |
ctca |
51700150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 21154519 - 21154304
Alignment:
| Q |
17 |
aaaagttgtagatgattcactcaaacaagttct-aaacaaaatgagaaattaaaaacatagagatgtaatgaaccattagcaaacctaaatcattgtcaa |
115 |
Q |
| |
|
|||| |||||||| ||||||| |||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
21154519 |
aaaaattgtagataattcactaaaacaaaatttgaaacaaaatgaagaattaaaaacatagagatgtaatgaaccattagcaaacatgaatcacggtcta |
21154420 |
T |
|
| Q |
116 |
gaaccatcatatgt---------------tcaaattacttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgttta |
200 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21154419 |
gaaccatcaaatgtagaaccatcaaatgttcaaattgcttctttagattcttcaactcttttcattgtagaaattgtgattaatcttctgcttttgttta |
21154320 |
T |
|
| Q |
201 |
tgactatatcatactc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21154319 |
tgactatatcatactc |
21154304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 21161654 - 21161439
Alignment:
| Q |
17 |
aaaagttgtagatgattcactcaaacaagttct-aaacaaaatgagaaattaaaaacatagagatgtaatgaaccattagcaaacctaaatcattgtcaa |
115 |
Q |
| |
|
|||| |||||||| ||||||| |||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
21161654 |
aaaaattgtagataattcactaaaacaaaatttgaaacaaaatgaagaattaaaaacatagagatgtaatgaaccattagcaaacatgaatcacggtcta |
21161555 |
T |
|
| Q |
116 |
gaaccatcatatgt---------------tcaaattacttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgttta |
200 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||| ||| |||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21161554 |
gaaccatcaaatgtagaaccatcaaatgttcaaattgcttctttagattcttcaactcttttcattgtagaaattgtgattaatcttctgcttttgttta |
21161455 |
T |
|
| Q |
201 |
tgactatatcatactc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21161454 |
tgactatatcatactc |
21161439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 468
Target Start/End: Complemental strand, 17627663 - 17627593
Alignment:
| Q |
399 |
acatacaaattttgagcagaaaagaaggaa-ctttggatcagaagaacatgacaacaacgtgatgatgaaa |
468 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
17627663 |
acatataaattttgagcagaaaagaatgaatttttggatcggaagaacagaacaacgacatgatgatgaaa |
17627593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 36552973 - 36552928
Alignment:
| Q |
278 |
aaacaaatgaagatactagctgatgtttcggcaacatgtctaataa |
323 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| ||||||| |||| |
|
|
| T |
36552973 |
aaacaaatgaagatactaactgatgtttcagcagcatgtcttataa |
36552928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 19203411 - 19203489
Alignment:
| Q |
138 |
cttctttagattctcgaacacttttcatcgtaacaattgtgattaatcttctgctcttgtttatgactatatcatactc |
216 |
Q |
| |
|
||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19203411 |
cttctttagcttctttaacactttttattgtaacaattgtgattaatcttctgctcttgtttatgactagatcatactc |
19203489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 18642514 - 18642611
Alignment:
| Q |
375 |
cccttagcatatgaagtgatcaaga---catacaaattttgagcagaaaagaaggaacttt-ggatcagaagaacatgacaacaacgtgatgatgaaa |
468 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| |||| ||||||||||||||| ||| ||| ||||| |||||||| ||||| | |||||||||||| |
|
|
| T |
18642514 |
cccttagcatgtgaagtgataaagaaaacatataaatattgagcagaaaagaatgaatttttggatcggaagaacagaacaaccatgtgatgatgaaa |
18642611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University