View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_13 (Length: 469)
Name: NF11482_high_13
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 1584794 - 1584354
Alignment:
| Q |
10 |
gcagagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggcct |
109 |
Q |
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| T |
1584794 |
gcagagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcaacaaaaggcct |
1584695 |
T |
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| Q |
110 |
taacactcaagaccttgtcacccttgttggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacatta |
209 |
Q |
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| T |
1584694 |
taacactcaagaccttgtcacccttgttggtaagagatctaaatattttcgaaatttatttatcactctagaattacatattgatgttgcat-cacatta |
1584596 |
T |
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| Q |
210 |
attaatattctatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgca |
309 |
Q |
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| T |
1584595 |
attaatattttatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgca |
1584496 |
T |
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| Q |
310 |
gctgatccttcaatagacccttcatttctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtc |
409 |
Q |
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| T |
1584495 |
gctgatccttcaatagacccttcatttctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtc |
1584396 |
T |
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| Q |
410 |
aaaataaatttgataattcttactatgctaatctgaggaacg |
451 |
Q |
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| T |
1584395 |
aaaataaatttgataattcttactatgctaatctgaggaacg |
1584354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 137 - 451
Target Start/End: Original strand, 1593216 - 1593529
Alignment:
| Q |
137 |
tggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacattaattaatattctatgaatatattatagg |
236 |
Q |
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| T |
1593216 |
tggtaagagatctaaatattttcaaaatttatttatcactctagaattacatattgatgttgcat-cacattaattaatattttatgaatatattatagg |
1593314 |
T |
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| Q |
237 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcattt |
336 |
Q |
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| T |
1593315 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaactttactacaaatggtgcagctgatccttcaatagacccttcattt |
1593414 |
T |
|
| Q |
337 |
ctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtcaaaataaatttgataattcttactatg |
436 |
Q |
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| T |
1593415 |
ctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtcaaaataaatttgataattcttactatg |
1593514 |
T |
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| Q |
437 |
ctaatctgaggaacg |
451 |
Q |
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| T |
1593515 |
ctaatctgaggaacg |
1593529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 1592280 - 1592411
Alignment:
| Q |
12 |
agagacggacgcgtgtcacaggcttctgatgtcaataacttgcctgctcctggtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggcctta |
111 |
Q |
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| T |
1592280 |
agagacggacgcgtgtcacaggcttctgacgtcaataacttgcccgctcctagtgattctgttgatgtgcagaaacaaaagtttgcagcaaaaggcctca |
1592379 |
T |
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| Q |
112 |
acactcaagaccttgtcacccttgttggtaag |
143 |
Q |
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| T |
1592380 |
acactcaagaccttgtcacccttgttggtaag |
1592411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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