View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_high_20 (Length: 411)

Name: NF11482_high_20
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_high_20
NF11482_high_20
[»] chr8 (17 HSPs)
chr8 (11-395)||(43282699-43283082)
chr8 (181-249)||(16523170-16523238)
chr8 (181-258)||(42013936-42014013)
chr8 (173-249)||(19334839-19334915)
chr8 (173-245)||(26021452-26021524)
chr8 (181-245)||(33934369-33934433)
chr8 (98-245)||(42072414-42072556)
chr8 (173-240)||(10112103-10112170)
chr8 (173-244)||(21525414-21525485)
chr8 (181-249)||(16591371-16591439)
chr8 (173-248)||(16818970-16819045)
chr8 (167-240)||(2271245-2271318)
chr8 (109-153)||(2824270-2824314)
chr8 (75-142)||(16591443-16591510)
chr8 (181-245)||(22324660-22324724)
chr8 (108-156)||(34697475-34697523)
chr8 (181-245)||(35806858-35806922)
[»] chr1 (24 HSPs)
chr1 (101-280)||(10907616-10907789)
chr1 (112-249)||(38859849-38859983)
chr1 (100-247)||(42456557-42456702)
chr1 (173-246)||(30745400-30745473)
chr1 (173-246)||(30766851-30766924)
chr1 (167-251)||(5558359-5558442)
chr1 (173-245)||(10156016-10156088)
chr1 (168-232)||(13131947-13132011)
chr1 (169-245)||(48392406-48392482)
chr1 (182-249)||(26835403-26835470)
chr1 (173-251)||(3346842-3346920)
chr1 (101-241)||(30252748-30252886)
chr1 (174-248)||(45968724-45968798)
chr1 (173-249)||(26511630-26511705)
chr1 (183-287)||(44107352-44107450)
chr1 (181-240)||(7742784-7742843)
chr1 (187-238)||(8430439-8430490)
chr1 (173-232)||(23908341-23908400)
chr1 (174-249)||(37189697-37189771)
chr1 (183-245)||(47022768-47022830)
chr1 (111-156)||(1106773-1106818)
chr1 (95-156)||(37189285-37189345)
chr1 (184-245)||(49902535-49902596)
chr1 (68-147)||(2756256-2756335)
[»] chr3 (21 HSPs)
chr3 (98-287)||(10839341-10839524)
chr3 (100-248)||(1781748-1781893)
chr3 (99-240)||(54546890-54547027)
chr3 (167-246)||(43347335-43347414)
chr3 (100-249)||(20382505-20382650)
chr3 (99-259)||(19649358-19649516)
chr3 (181-245)||(8950504-8950568)
chr3 (173-245)||(13856155-13856227)
chr3 (167-247)||(22845360-22845440)
chr3 (181-244)||(27642724-27642787)
chr3 (168-249)||(3178754-3178835)
chr3 (174-240)||(33103800-33103866)
chr3 (173-245)||(5391513-5391585)
chr3 (75-249)||(6280355-6280525)
chr3 (181-245)||(21853261-21853325)
chr3 (173-249)||(46685780-46685855)
chr3 (173-245)||(51336265-51336337)
chr3 (183-240)||(8926832-8926889)
chr3 (100-153)||(36826043-36826096)
chr3 (88-155)||(3178680-3178745)
chr3 (100-156)||(33103730-33103786)
[»] chr2 (16 HSPs)
chr2 (75-246)||(14539703-14539871)
chr2 (167-243)||(33009723-33009799)
chr2 (100-233)||(3956558-3956688)
chr2 (167-240)||(6318463-6318536)
chr2 (170-247)||(28321701-28321778)
chr2 (181-245)||(19181612-19181676)
chr2 (173-245)||(29846498-29846570)
chr2 (100-233)||(41674718-41674849)
chr2 (100-245)||(43139732-43139875)
chr2 (181-258)||(40277275-40277352)
chr2 (99-156)||(40780040-40780097)
chr2 (181-245)||(14942044-14942108)
chr2 (181-245)||(42769758-42769822)
chr2 (101-156)||(32486231-32486286)
chr2 (195-232)||(40780134-40780171)
chr2 (181-245)||(14186438-14186502)
[»] chr5 (27 HSPs)
chr5 (167-251)||(27916190-27916274)
chr5 (112-240)||(614397-614522)
chr5 (100-249)||(8456959-8457105)
chr5 (75-242)||(42119583-42119747)
chr5 (174-258)||(16618557-16618641)
chr5 (101-242)||(25560330-25560468)
chr5 (100-249)||(36769070-36769215)
chr5 (100-240)||(10081131-10081268)
chr5 (173-249)||(33271266-33271342)
chr5 (98-245)||(38397584-38397726)
chr5 (195-246)||(29790218-29790269)
chr5 (173-247)||(6174800-6174876)
chr5 (167-286)||(10115210-10115326)
chr5 (107-257)||(11856288-11856435)
chr5 (101-152)||(22903244-22903295)
chr5 (167-246)||(9737980-9738061)
chr5 (98-156)||(29491498-29491556)
chr5 (167-245)||(39862487-39862565)
chr5 (168-248)||(3341117-3341197)
chr5 (173-249)||(10052496-10052572)
chr5 (100-156)||(10052618-10052674)
chr5 (180-258)||(29491401-29491478)
chr5 (173-245)||(15631669-15631742)
chr5 (185-238)||(33188330-33188383)
chr5 (181-245)||(6257410-6257474)
chr5 (181-245)||(23218549-23218613)
chr5 (181-245)||(37169033-37169097)
[»] chr7 (17 HSPs)
chr7 (106-248)||(10334170-10334309)
chr7 (100-249)||(33057653-33057798)
chr7 (167-251)||(19334554-19334638)
chr7 (100-246)||(17303113-17303257)
chr7 (167-240)||(15017823-15017896)
chr7 (173-245)||(29555939-29556011)
chr7 (195-240)||(43342488-43342533)
chr7 (181-245)||(10576737-10576801)
chr7 (181-245)||(24320439-24320503)
chr7 (173-245)||(32876530-32876602)
chr7 (181-245)||(34707180-34707244)
chr7 (181-245)||(44164743-44164807)
chr7 (75-156)||(26284463-26284546)
chr7 (167-240)||(9770709-9770782)
chr7 (173-238)||(29981120-29981185)
chr7 (181-245)||(34259582-34259646)
chr7 (100-156)||(41853119-41853175)
[»] chr4 (23 HSPs)
chr4 (108-249)||(17888546-17888684)
chr4 (167-249)||(47084062-47084144)
chr4 (98-258)||(12792218-12792375)
chr4 (109-249)||(46473989-46474126)
chr4 (174-249)||(10094389-10094464)
chr4 (167-240)||(9742538-9742611)
chr4 (95-242)||(11054434-11054581)
chr4 (181-245)||(25954814-25954878)
chr4 (75-156)||(322635-322716)
chr4 (100-249)||(31377376-31377521)
chr4 (181-246)||(20818631-20818696)
chr4 (173-245)||(16338213-16338285)
chr4 (181-244)||(54090244-54090307)
chr4 (195-249)||(19124734-19124788)
chr4 (181-243)||(37801266-37801328)
chr4 (181-258)||(49284421-49284498)
chr4 (181-245)||(1535835-1535899)
chr4 (95-245)||(35018919-35019063)
chr4 (181-256)||(36012174-36012249)
chr4 (186-245)||(36851387-36851446)
chr4 (173-240)||(50328852-50328919)
chr4 (259-287)||(9742480-9742508)
chr4 (181-245)||(34241057-34241121)
[»] chr6 (12 HSPs)
chr6 (100-245)||(28750650-28750792)
chr6 (109-246)||(27863695-27863829)
chr6 (106-156)||(11279533-11279583)
chr6 (172-249)||(24497570-24497647)
chr6 (181-251)||(14309792-14309862)
chr6 (201-258)||(34088774-34088831)
chr6 (181-245)||(24694651-24694715)
chr6 (114-244)||(13103119-13103246)
chr6 (100-156)||(11212658-11212714)
chr6 (182-258)||(13627605-13627681)
chr6 (101-232)||(34103673-34103800)
chr6 (182-245)||(1727933-1727996)
[»] scaffold0086 (1 HSPs)
scaffold0086 (174-240)||(20836-20902)
[»] scaffold0079 (1 HSPs)
scaffold0079 (173-245)||(54575-54647)
[»] scaffold0620 (1 HSPs)
scaffold0620 (201-246)||(2225-2270)
[»] scaffold0045 (1 HSPs)
scaffold0045 (167-240)||(34457-34530)
[»] scaffold0016 (1 HSPs)
scaffold0016 (109-153)||(85506-85550)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 43283082 - 43282699
Alignment:
Q  11 atgaagactacggagtttaaactttgactcttgcataatattgtacctgcaaccaggtgacggggccaggattgttaaaagtatggacaaaaaacaaatt 110  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43283082 atgaagactacagagtttaaacttcgactcttgcataatattgtacttgcaaccaggtgacggagccaggattgttaaaagtatggacaaaaaacaaatt 43282983  T
Q  111 gcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaattc 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||||| |||||||||||||||||    
T  43282982 gcaatacatttatagatatttacataagaaatagcaagcaaataataaaaat---ttctaatgaaattacccaatttatagggatttatataataaattc 43282886  T
Q  211 agaagaatttacataagaaattgtaaaaaatttgggccgaaccccggaggggtcgccgggcggtgaaaccaccactgcttacaactatcaactaagttgt 310  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  | |||||||||| |||||||||||||||||||||||||||||    
T  43282885 agaagaatttacataagaaattgtaaaaaatttgagccgaaccccgaaggggtcgctagacggtgaaaccgccactgcttacaactatcaactaagttgt 43282786  T
Q  311 gcttacaacaccatgtgatta--nnnnnnnnnaattatggtgaaaagtgaatttatgtaacaaatatcatgagtttgatctaaaatt 395  Q
    ||||||||||| |||||||||           |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43282785 gcttacaacactatgtgattatttatttttttaattgtggttaaaagtgaatttatgtaacaaatatcatgagtttgatctaaaatt 43282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 16523170 - 16523238
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||||||||| |||||||||| ||||||| | | ||||||||| |||||||||||||||||||||||    
T  16523170 ccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccg 16523238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 42013936 - 42014013
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    ||||||||||||| ||||||||| ||||||| | | ||||||| ||||||||| ||||||||||| ||||| ||||||    
T  42013936 ccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaaacccgga 42014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 19334839 - 19334915
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||| || |||||||||   ||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  19334839 gaaattgtctaatttatagaggtttatataaaaaattcataagaatttatataagaaattgcaaaaaatttgggccg 19334915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 26021452 - 26021524
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||| ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  26021452 gaaattacccaatttataggggtttatataagaaattcatagggatttacaaaagaaattgcaaaaaatttgg 26021524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 33934433 - 33934369
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | ||||||||| ||||||||| |||||||||||    
T  33934433 ccaatttataggggtttatataagaaattcataggaatttacaaaagaaattgcaaaaaatttgg 33934369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 42072414 - 42072556
Alignment:
Q  98 caaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattt 197  Q
    ||||||| || ||||||||||||||||  | |||||||||||||| |||||||||||||          | ||| |||||| |||||||||||||  |||    
T  42072414 caaaaaaaaatttgcaacacatttatat-tgtttacataagaaattgcaagcaaataataaaaaa----tgtaaagaaattgtccaatttataggggttt 42072508  T
Q  198 atataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| ||||||| | | ||||||| ||||||||| |||||| ||||    
T  42072509 atataagaaattcatagggatttacacaagaaattgcaaaaaaattgg 42072556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 10112103 - 10112170
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    |||||| ||||||||||| || ||||||||| ||||| ||| |||||||||||| |||||| ||||||    
T  10112103 gaaattgtccaatttataagagtttatataagaaattaagaggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 21525414 - 21525485
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttg 244  Q
    |||||| |||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| ||||||||||    
T  21525414 gaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttg 21525485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 16591439 - 16591371
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||||||||  |||||||||| ||||||  |  |||||||||||||||||| ||||||||| |||||    
T  16591439 ccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaatttaggccg 16591371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 16819045 - 16818970
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaaga-atttacataagaaattgtaaaaaatttgggcc 248  Q
    ||||||| ||||||||||||  ||||||||| ||||||| | || ||||||| ||||||||| ||||||||||||||    
T  16819045 gaaattacccaatttataggggtttatataagaaattca-aggagatttacaaaagaaattgcaaaaaatttgggcc 16818970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 2271245 - 2271318
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| ||||||| | ||| ||||||  ||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  2271245 tctaaagaaattacctaatatataggggtttatataagaaattcagcatgatttacataagaaattgcaaaaaa 2271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 2824314 - 2824270
Alignment:
Q  109 ttgcaacacatttatagatatttacataagaaatagcaagcaaat 153  Q
    |||||||||||||| || | |||||||||||||| ||||||||||    
T  2824314 ttgcaacacatttaaaggtgtttacataagaaattgcaagcaaat 2824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 16591510 - 16591443
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaat 142  Q
    ||||||||| ||| ||||||||| ||||||| |||||||||||||||||||    ||||||||||||||    
T  16591510 gccaggattattataaagtatgggcaaaaaa-aaattgcaacacatttataagggtttacataagaaat 16591443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 22324660 - 22324724
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||  |||||||||||    
T  22324660 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttgg 22324724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 34697523 - 34697475
Alignment:
Q  108 attgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||||| |||||||   ||||||||||||||| |||||||||||||    
T  34697523 attgcaacatatttataagaatttacataagaaattgcaagcaaataat 34697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 35806858 - 35806922
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| |   ||||||| ||||||||| |||||||||||    
T  35806858 ccaatttataggggtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttgg 35806922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 10907789 - 10907616
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttata 200  Q
    |||| |||||||||||||||||||| | | |||||||||||| |||||||||||||          ||||| |||||| ||  |||||||||  ||||||    
T  10907789 aaaaaaaattgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaa---tctaaagaaattgtctgatttataggggtttata 10907693  T
Q  201 taataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccggaggggtcgccgggcggtgaaacc 280  Q
    ||| ||||||||| ||||||||||||||||||| ||||||||||||||| | |||   ||||||||||||||||||||||    
T  10907692 taagaaattcagaggaatttacataagaaattgcaaaaaatttgggccggagccc---ggggtcgccgggcggtgaaacc 10907616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 38859849 - 38859983
Alignment:
Q  112 caacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaattca 211  Q
    ||||||||||||||   |||||||||||||| |||||||||||||          |||||  |||||  ||||||||||||  ||||||||| |||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaa---tctaaaaaaattgcccaatttataggggtttatataagaaattca 38859945  T
Q  212 gaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
     | ||||||||||||||||||| |||||||||||||||    
T  38859946 taggaatttacataagaaattgaaaaaaatttgggccg 38859983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 42456557 - 42456702
Alignment:
Q  100 aaaaacaaattgcaacacatttatagat-atttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattta 198  Q
    ||||| ||||||||||||||||||||   ||||||||||||||| ||||| | |||||         || ||| ||||||  ||||||||||||  ||||    
T  42456557 aaaaaaaaattgcaacacatttataggggatttacataagaaattgcaagtagataataaattt---ttttaaagaaattgcccaatttataggggttta 42456653  T
Q  199 tataataaattcagaagaatttacataagaaattgtaaaaaatttgggc 247  Q
    ||||| ||||||| | ||||||||||||||||| | |||||||||||||    
T  42456654 tataagaaattcataggaatttacataagaaatagcaaaaaatttgggc 42456702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 30745400 - 30745473
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    |||||| ||||||||||||| ||||||| || |||||||||  ||||||||||| |||||| |||| |||||||    
T  30745400 gaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaaaatatttggg 30745473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 30766851 - 30766924
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    |||||| ||||||||||||| ||||||| || |||||||||  ||||||||||| |||||| |||| |||||||    
T  30766851 gaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaaaattgcaaaatatttggg 30766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 5558359 - 5558442
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaa 251  Q
    ||||| |||||| |||||||||||||  ||||||||| |||||| ||||  |||||||||||||||| |||||| || |||||||    
T  5558359 tctaaagaaattgtccaatttataggggtttatataagaaattcggaag-gtttacataagaaattgcaaaaaaattaggccgaa 5558442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 10156088 - 10156016
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||| | ||||||||| ||||||| | ||||||||| ||||||||| |||||| ||||    
T  10156088 gaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattgg 10156016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 13131947 - 13132011
Alignment:
Q  168 ctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaatt 232  Q
    |||| |||||| ||||||||||||  |||||||||| ||||| ||| ||||||||||||||||||    
T  13131947 ctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaaatt 13132011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 48392482 - 48392406
Alignment:
Q  169 taatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||  |||||||||||| |||||||||| ||||||| | | ||||||| ||||||||| |||||| ||||    
T  48392482 taatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaaattgg 48392406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 26835403 - 26835470
Alignment:
Q  182 caatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||||||||| ||||||||| ||||||| | |||||||||||| |||||| |||||| || |||||    
T  26835403 caatttataggagtttatataagaaattcatatgaatttacataataaattgcaaaaaaattaggccg 26835470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 3346842 - 3346920
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaa 251  Q
    |||||| |||||||||||||  ||||||||| ||||||| | | ||||||| || |||||| ||||||||||| |||||    
T  3346842 gaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattgcaaaaaatttggcccgaa 3346920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 30252886 - 30252748
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttata 200  Q
    |||||||||| ||||| ||||||||   |||||||||||||| |||||||||||||          ||||| ||| || || |||||||||| |||||||    
T  30252886 aaaacaaattccaacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaa---tctaaagaagttgtctaatttatagggatttata 30252790  T
Q  201 t-aataaattcagaagaatttacataagaaattgtaaaaaat 241  Q
    | || |||||||||| |||||| |||| |||||| |||||||    
T  30252789 taaaaaaattcagaaaaatttatataaaaaattgcaaaaaat 30252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 45968724 - 45968798
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggcc 248  Q
    ||||| ||||||||||| ||  |||||||| |||||||| |||| |||||||| | |||| ||||||||||||||    
T  45968724 aaattgtccaatttataagagattatataaaaaattcaggagaacttacataaaatattgcaaaaaatttgggcc 45968798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 26511705 - 26511630
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||||| ||||||| |||||||||||||| ||||||||  |  |||||||||||||||| |||||| || |||||    
T  26511705 gaaattattcaatttacaggaatttatataagaaattcag-ggggtttacataagaaattgcaaaaaaattaggccg 26511630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 44107450 - 44107352
Alignment:
Q  183 aatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccggaggggtcgccgggcggtgaaaccac 282  Q
    ||||||||||  ||||||||| ||| ||||| |||||||||||||||   | |||||| |||| ||| | ||||||   ||||||||||||||||||| |    
T  44107450 aatttataggggtttatataaaaaaatcagaggaatttacataagaa---gcaaaaaaattggaccggagcccgga---gtcgccgggcggtgaaaccgc 44107357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 7742843 - 7742784
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||||||||||  ||||||||| ||||||| ||| ||||||| ||||||||| ||||||    
T  7742843 ccaatttataggggtttatataagaaattcataaggatttacacaagaaattgcaaaaaa 7742784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 8430490 - 8430439
Alignment:
Q  187 tataggaatttatataataaattcagaagaatttacataagaaattgtaaaa 238  Q
    |||| |||||||||||| ||||| |||||||||||||||| ||| |||||||    
T  8430490 tataagaatttatataagaaattgagaagaatttacataaaaaactgtaaaa 8430439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 23908341 - 23908400
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaatt 232  Q
    |||||| ||||||||||||| |||||||||| ||||||| | ||||||||| || |||||    
T  23908341 gaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 37189697 - 37189771
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||||| ||||||||||||  |||||||||| ||||||| |   |||||||||||||||||  ||||||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattg-caaaaatttgggccg 37189771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 47022768 - 47022830
Alignment:
Q  183 aatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||| ||||||||| ||||||| |   ||||||| ||||||||| |||||||||||    
T  47022768 aatttataggagtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttgg 47022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 1106773 - 1106818
Alignment:
Q  111 gcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||||||||||   ||||||||||||||| |||||||||||||    
T  1106773 gcaacacatttataagaatttacataagaaattgcaagcaaataat 1106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 37189285 - 37189345
Alignment:
Q  95 ggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    |||||||||| |||||| | ||||||||||||  |||||||||||||| |||| ||||||||    
T  37189285 ggacaaaaaa-aaattgtagcacatttatagaggtttacataagaaattgcaaacaaataat 37189345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 49902535 - 49902596
Alignment:
Q  184 atttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  49902535 atttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 49902596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 2756335 - 2756256
Alignment:
Q  68 tgacggggccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaa 147  Q
    |||||| ||||||||| ||| ||||| || |||||||| ||||||||||| ||||||||   |||||||||||||| ||||    
T  2756335 tgacggagccaggattattataaagtttgaacaaaaaa-aaattgcaacatatttataggagtttacataagaaattgcaa 2756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 10839524 - 10839341
Alignment:
Q  98 caaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattt 197  Q
    ||||||| || ||||||||||| ||||| | |||||||||||||| |||||||||||||          ||||| ||||||  |||||||||||   |||    
T  10839524 caaaaaaaaatttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaa---tctaaagaaattgcccaatttatagaggttt 10839428  T
Q  198 atataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccggaggggtcgccgggcggtgaaaccaccactg 287  Q
    |||||| |||||||||  |||||||||||||||||| |||||||||||| || | |||   ||||||| |||||||||||||| ||||||    
T  10839427 atataagaaattcagagaaatttacataagaaattgcaaaaaatttgggtcggagccc---ggggtcgtcgggcggtgaaaccgccactg 10839341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 1781748 - 1781893
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||||||||||||   |||||||| ||||| |||||||||||||          ||||| ||||||  ||||||||| ||  |||||    
T  1781748 aaaaaaaaattgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaa---tctaaagaaattgcccaatttattggggtttat 1781844  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggcc 248  Q
    |||| ||||||||| | ||||||||||||||||| ||||||||||||||    
T  1781845 ataagaaattcagagggatttacataagaaattgcaaaaaatttgggcc 1781893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 54546890 - 54547027
Alignment:
Q  99 aaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattta 198  Q
    |||||| |||||| |||||||||||||  ||||||||||||||| | |||||||||||          ||||| |||||| |||||||||||||  ||||    
T  54546890 aaaaaaaaaattgtaacacatttatagggatttacataagaaattgtaagcaaataatcaaaaa----tctaaagaaattgtccaatttataggggttta 54546985  T
Q  199 tataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| ||||||| | |||||||| |||||||||| ||||||    
T  54546986 tataagaaattcaaaggaatttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 43347414 - 43347335
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    ||||| ||||||  ||||||| ||||  ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  43347414 tctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataagaaattgcaaaaaatttggg 43347335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 20382505 - 20382650
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| |||||||||| |||||||||   |||||||||||||| |||||||||||||          ||||| ||||||  ||||||||||||  |||||    
T  20382505 aaaaaaaaattgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaa---tctaaagaaatttcccaatttataggggtttat 20382601  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||| | | ||||||||||||||||  |||||||||||||||    
T  20382602 ataagaaattcatagggatttacataagaaatt-aaaaaaatttgggccg 20382650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 19649516 - 19649358
Alignment:
Q  99 aaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattta 198  Q
    |||||| ||||||||||||||||||||  | ||||||||||||| |||||||||||||          ||||| |||||| ||||||||||| |  ||||    
T  19649516 aaaaaaaaaattgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaa--tctaaagaaattgtccaatttataagggttta 19649419  T
Q  199 tataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccggag 259  Q
    ||||| ||||||| |   ||||||||||||||||  |||||| ||| |||| | |||||||    
T  19649418 tataagaaattcatagcgatttacataagaaattacaaaaaagttgtgccggagcccggag 19649358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 8950568 - 8950504
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||||||||| |||||||||| ||||||| | ||||||||| ||||||||| |||||||||||    
T  8950568 ccaatttatagggatttatataagaaattcataggaatttacacaagaaattgcaaaaaatttgg 8950504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 13856155 - 13856227
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| ||||||||||||| |||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  13856155 gaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattgaaaaaaatttgg 13856227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 22845440 - 22845360
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggc 247  Q
    ||||| |||||| || ||||||||||  ||||||||| ||||| ||  ||||||||||||||||||| |||||||||||||    
T  22845440 tctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataagaaattgcaaaaaatttgggc 22845360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 27642724 - 27642787
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttg 244  Q
    |||||||||| | |||||||||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  27642724 ccaatttataaggatttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttg 27642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 3178754 - 3178835
Alignment:
Q  168 ctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||  |||||||||||  |||||||||| ||||||| | | ||||||| ||||||||| |||||||||||||||    
T  3178754 ctaaagaaattgcccaatttatagagatttatataagaaattcatagggatttacacaagaaattgaaaaaaatttgggccg 3178835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 33103800 - 33103866
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||||||||||||||||| | |||||||| ||||| |   ||||||||||||||||||| ||||||    
T  33103800 aaattatccaatttatagggacttatataagaaatttaagggaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 5391513 - 5391585
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||||  ||||||||| ||||||| | | ||||||| |||||||||| ||||| ||||    
T  5391513 gaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgtcaaaaaattgg 5391585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 6280525 - 6280355
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatg 173  Q
    ||||||||| ||| ||||| ||||||||||| || |||||||||||||||| |  ||||||||| |||| |||||||||| ||          |||||      
T  6280525 gccaggattattataaagtctggacaaaaaa-aatttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa----tctaaat 6280431  T
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||||| || |||||||||   ||||||||| ||||||||   |||||||||||||||||| | ||||||| |||||    
T  6280430 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccg 6280355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 21853261 - 21853325
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  21853261 ccaatttatagggttttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 21853325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 46685855 - 46685780
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||| || ||||||||||| ||||||||| ||||| ||  | |||||||||||||| || |||||||||||||||    
T  46685855 gaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa-tgcaaaaaatttgggccg 46685780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 51336265 - 51336337
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| || ||||||||   |||||||||| |||||||| ||||||||||||| |||||| |||||| ||||    
T  51336265 gaaattgtcaaatttataaagatttatataaaaaattcaggagaatttacataaaaaattgcaaaaaaattgg 51336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 8926832 - 8926889
Alignment:
Q  183 aatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||||||||  ||||||| | ||||||||| ||||||||||| ||||||| ||||||    
T  8926832 aatttataggggtttatatcagaaattcagaggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 36826096 - 36826043
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaat 153  Q
    ||||| ||||||||||||||||||||   |||||||||||||  ||||||||||    
T  36826096 aaaaaaaaattgcaacacatttataggggtttacataagaaactgcaagcaaat 36826043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 3178680 - 3178745
Alignment:
Q  88 aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataa 155  Q
    ||||| |||||||||||  |||||||||| ||||||||   |||||||| ||||| ||||||||||||    
T  3178680 aaagtctggacaaaaaa--aattgcaacatatttataggagtttacatacgaaattgcaagcaaataa 3178745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 33103730 - 33103786
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||| || ||||||||||||||||   |||||||||||||||  ||||||||||||    
T  33103730 aaaaaaaatttgcaacacatttataaggatttacataagaaattacaagcaaataat 33103786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 246
Target Start/End: Complemental strand, 14539871 - 14539703
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatg 173  Q
    ||||||||||||| ||||  | ||||||||| || ||||||||||||||||| | |||| ||||||||| ||||| |||||||          ||||| |    
T  14539871 gccaggattgttataaagcctagacaaaaaa-aatttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaa---tctaaag 14539776  T
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    |||||  | ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||    
T  14539775 aaattgcctaatttataggaatttatataagaaattcagaggaaattacataagaaattgcaaaaaatttggg 14539703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 33009723 - 33009799
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaattt 243  Q
    ||||| |||||| ||||||||||| | |||||||||| ||||||| | | ||||| |||||||||||||||||||||    
T  33009723 tctaaagaaattgtccaatttataaggatttatataacaaattcatagggatttatataagaaattgtaaaaaattt 33009799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 3956558 - 3956688
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| |||||||||||||||||||||  |||||||  ||||| |||||||||||||         || ||| |||||| ||||||||| |||  |||||    
T  3956558 aaaaaaaaattgcaacacatttatagaggtttacatttgaaattgcaagcaaataat---aaaaaattttaaagaaattgtccaatttacaggggtttat 3956654  T
Q  200 ataataaattcagaagaatttacataagaaattg 233  Q
    |||||||||||| | | |||||||||| ||||||    
T  3956655 ataataaattcatagggatttacataaaaaattg 3956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 6318536 - 6318463
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| ||||||  |||||||||||| |||||||||| ||||||| | | ||||||||||||||||| ||||||    
T  6318536 tctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacataagaaattgaaaaaaa 6318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 28321778 - 28321701
Alignment:
Q  170 aatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggc 247  Q
    |||||||||  |||||||||| |  ||||||||| | |||||| |||||||||||||||||||| |||||| ||||||    
T  28321778 aatgaaattgcccaatttataagggtttatataagatattcaggagaatttacataagaaattgcaaaaaaattgggc 28321701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 19181612 - 19181676
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | ||||||||| ||||||||| |||||||||||    
T  19181612 ccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttgg 19181676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29846498 - 29846570
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  29846498 gaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 29846570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 41674849 - 41674718
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| || |||||||||||||||||  ||||| ||||||||| ||||||||||| |          ||||| |||||| ||||||||||| |  |||||    
T  41674849 aaaaaaaatttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaa--tctaaagaaattgtccaatttataagggtttat 41674752  T
Q  200 ataataaattcagaagaatttacataagaaattg 233  Q
    |||| |||||||||   |||||||||||||||||    
T  41674751 ataaaaaattcagagagatttacataagaaattg 41674718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 43139732 - 43139875
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| |||||||||| ||||| ||| | |||| ||||||||| |||||||||||||          ||||| ||||||   |||||||||||  |||||    
T  43139732 aaaaaaaaattgcaacgcatttgtaggtgtttatataagaaattgcaagcaaataataaaaaaaa--tctaaagaaattgctcaatttataggggtttat 43139829  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||| ||||| ||| ||| ||||||||||||||| |||||| ||||    
T  43139830 ataagaaattaagaggaacttacataagaaattgcaaaaaaattgg 43139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 40277352 - 40277275
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    |||||||||||| |||||||||| ||||| | | | |||||||||| |||||| ||||||||||| ||| | ||||||    
T  40277352 ccaatttatagggatttatataagaaatttatagggatttacataaaaaattgcaaaaaatttggcccggagcccgga 40277275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 40780040 - 40780097
Alignment:
Q  99 aaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    |||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||    
T  40780040 aaaaaaaaaattgcaacatatttatagcggtttacataagaaattgcaagcaaataat 40780097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 14942108 - 14942044
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  14942108 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 14942044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 42769822 - 42769758
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  42769822 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 42769758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 32486231 - 32486286
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    |||| |||||||||||||||||||  | |||| ||||||||| |||||||||||||    
T  32486231 aaaaaaaattgcaacacatttataagtgtttatataagaaattgcaagcaaataat 32486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 40780134 - 40780171
Alignment:
Q  195 tttatataataaattcagaagaatttacataagaaatt 232  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  40780134 tttatataagaaattcagaggaatttacataagaaatt 40780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 14186502 - 14186438
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||  |||||||||||    
T  14186502 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattacaaaaaatttgg 14186438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 27916190 - 27916274
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaa 251  Q
    ||||||||||||   |||||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  27916190 tctaatgaaattgctcaatttataggagtttatataagaaattcagaggaatttacataagaaattgcaaaaaatttaggccgaa 27916274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  112 caacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaattca 211  Q
    |||||||||||||| | |||||||||||||| |||||||||||||          ||||| ||||||  | |||||||||| |||||||||| |||||||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaa---tctaaagaaattgccaaatttatagggatttatataaaaaattca 614426  T
Q  212 gaagaatttacataagaaattgtaaaaaa 240  Q
    || ||||||||||||||||||| ||||||    
T  614425 gaggaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 8457105 - 8456959
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||          ||||| ||||||  ||||||||||||   ||||    
T  8457105 aaaaaaaaattgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaa---tctaaagaaattgcccaatttatagggggttat 8457009  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||| | | ||||||||||||||||| |||||||||||||||    
T  8457008 ataagaaattcatagggatttacataagaaattgaaaaaaatttgggccg 8456959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 42119583 - 42119747
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatg 173  Q
    ||||||||| ||| |||| |||||||||| | ||||||||||||||||||||   ||||||||||||||  ||| ||||||||          ||||| |    
T  42119583 gccaggattattataaagcatggacaaaaga-aaattgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaa---tctaaag 42119678  T
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatt 242  Q
    ||||| ||||||||||||   ||||||||| ||||||||| ||||||||||||||||||  ||||||||    
T  42119679 aaattgtccaatttatagaggtttatataagaaattcagaggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 16618641 - 16618557
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    ||||| |||||||||||||| ||||||||| ||||||| | | ||||||| ||||||||||||||||||||| ||| | ||||||    
T  16618641 aaattgtccaatttataggagtttatataagaaattcatagggatttacacaagaaattgtaaaaaatttggcccggagcccgga 16618557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 25560468 - 25560330
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttata 200  Q
    |||| |||||||||||||||||||    |||||||||||||| |||||||||||||          ||||| |||||| ||||||||||||   ||||||    
T  25560468 aaaaaaaattgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataa---tctaaagaaattgtccaatttatagatgtttata 25560372  T
Q  201 taataaattcagaagaatttacataagaaattgtaaaaaatt 242  Q
    ||| ||||| | ||| ||||||||||||||||| ||||||||    
T  25560371 taagaaatttataaggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 36769215 - 36769070
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| || |||||||||||||||||   |||||||| ||||| |||||||||||||          ||||| ||||||  | |||| ||||   |||||    
T  36769215 aaaaaaaatttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaa----tctaaagaaattgcctaattcatagaggtttat 36769120  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  36769119 ataagaaattcagaggaatttacataagaaattgcaaaaaatttgggccg 36769070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 10081131 - 10081268
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||||||||||||   |||||||||||||| | |||||||||||          ||||| ||||||  ||||||||||||  |||||    
T  10081131 aaaaaaaaattgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaa---tctaaagaaattgcccaatttataggggtttat 10081227  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    |||| ||||||| | | ||||||||||||||||| ||||||    
T  10081228 ataagaaattcatagggatttacataagaaattgaaaaaaa 10081268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 33271342 - 33271266
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||| ||||||||||||   ||||||||| |||||||   |||||||||||||||||||||||||| ||||||||    
T  33271342 gaaattgtccaatttatagaggtttatataagaaattcaacggaatttacataagaaattgtaaaaaaattgggccg 33271266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 38397584 - 38397726
Alignment:
Q  98 caaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattt 197  Q
    ||||||||||||||||||||||||||||  |  |||||||||||| |||||||||||||          | ||| ||||||  ||||||||||||  |||    
T  38397584 caaaaaacaaattgcaacacatttatag-gacgtacataagaaattgcaagcaaataataaaaaa----tgtaaagaaattgcccaatttataggggttt 38397678  T
Q  198 atataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  38397679 atataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 38397726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 29790269 - 29790218
Alignment:
Q  195 tttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  29790269 tttatataagaaattcataagaatttacataagaaattgtaaaaattttggg 29790218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 6174800 - 6174876
Alignment:
Q  173 gaaattatccaatttataggaa--tttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggc 247  Q
    |||||| |||||||||||||    ||||||||| |||||||||||||||||| |||||||||  |||||||||||||    
T  6174800 gaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaagaaattacaaaaaatttgggc 6174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 10115210 - 10115326
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccggaggggtcgc 266  Q
    ||||| |||||| || ||||||| ||  ||||||||| |||| |||| |||||||||||| |||||| |||||| |||||||| | |||   ||| ||||    
T  10115210 tctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaaaaattgggccggagccc---gggatcgc 10115306  T
Q  267 cgggcggtgaaaccaccact 286  Q
     ||||||||||||| |||||    
T  10115307 tgggcggtgaaaccgccact 10115326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 11856288 - 11856435
Alignment:
Q  107 aattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataa 206  Q
    |||||||||| ||||||||   |||||||||||||| ||||| |||||||          ||||| ||||||  |||||||||||  |||||||||| ||    
T  11856288 aattgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaa---tctaaagaaattgcccaatttatagtgatttatataagaa 11856384  T
Q  207 attcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgg 257  Q
    |||||||   ||||||||||||||||  | |||| |||||||||| |||||    
T  11856385 attcagagcgatttacataagaaattacagaaaacttgggccgaagcccgg 11856435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 22903244 - 22903295
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaa 152  Q
    |||| |||||||||||||||||||||  |||||||||||||| |||||||||    
T  22903244 aaaaaaaattgcaacacatttatagaggtttacataagaaattgcaagcaaa 22903295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 9738061 - 9737980
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaa--tttacataagaaattgtaaaaaatttggg 246  Q
    ||||| |||||| ||||||||||||| |||||||||| ||||||| | | |  |||||||||||||||| |||||| |||||    
T  9738061 tctaaagaaattgtccaatttatagggatttatataagaaattcatagggatttttacataagaaattgaaaaaaaattggg 9737980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 29491556 - 29491498
Alignment:
Q  98 caaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||| |||||||||||||||||||  | ||| |||||||||| |||||||||||||    
T  29491556 caaaaaaaaaattgcaacacatttatatgtgtttgcataagaaattgcaagcaaataat 29491498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 39862565 - 39862487
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||| ||||||  ||||||||||||  ||||||||| ||||||| | ||||||||| ||||||||| |||||| ||||    
T  39862565 tctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaaaaaattgg 39862487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 3341197 - 3341117
Alignment:
Q  168 ctaatgaaattatccaatttataggaatttatataataaa-ttcagaagaatttacataagaaattgtaaaaaatttgggcc 248  Q
    |||| ||||||  ||||||||||||   |||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||    
T  3341197 ctaaagaaatttcccaatttataggggattatataaaaaaattcaga-gaatttacataagaaattgcaaaaaatttgggcc 3341117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 10052572 - 10052496
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||||||| | |||||||||   |||||||||  | |||||| | |||||||||||||||||||||||| ||||||||    
T  10052572 gaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaaaaattgggccg 10052496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 10052674 - 10052618
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||| ||||||||||| ||||||||   |||||||||||||| |||||||||||||    
T  10052674 aaaaaaaaattgcaacatatttataggcttttacataagaaattgcaagcaaataat 10052618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 29491478 - 29491401
Alignment:
Q  180 tccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    |||||||||||||  || |||||| ||||||| |  |||||||||||||||||| |||| |||||||| ||| ||||||    
T  29491478 tccaatttataggggtt-atataagaaattcatagaaatttacataagaaattgcaaaagatttgggctgaagcccgga 29491401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 15631669 - 15631742
Alignment:
Q  173 gaaattatccaatttataggaa-tttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||||   ||||||||| ||||||| | | ||||| | |||||||||||||||||||||    
T  15631669 gaaattgtccaatttatagggggtttatataagaaattcatagggatttatacaagaaattgtaaaaaatttgg 15631742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 33188383 - 33188330
Alignment:
Q  185 tttataggaatttatataataaattcagaagaatttacataagaaattgtaaaa 238  Q
    ||||||||  ||||||||| ||||| ||| ||||||||||||||||||| ||||    
T  33188383 tttataggggtttatataagaaatttagatgaatttacataagaaattgcaaaa 33188330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 6257474 - 6257410
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||| ||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  6257474 ccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 6257410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 23218549 - 23218613
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| ||||| |||||    
T  23218549 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaactttgg 23218613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 37169097 - 37169033
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| || |||||| |||||||||||    
T  37169097 ccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttgg 37169033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 10334170 - 10334309
Alignment:
Q  106 aaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataata 205  Q
    ||||||||||||||||||||   |||||||||||||| ||||||||||| |          ||||| ||||||  |||||||||| || ||||||||| |    
T  10334170 aaattgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaata---tctaaagaaattgcccaatttataagagtttatataaga 10334266  T
Q  206 aattcagaagaatttacataagaaattgtaaaaaatttgggcc 248  Q
    |||||||| ||||||||||||||||||| |||||| |||||||    
T  10334267 aattcagaggaatttacataagaaattgcaaaaaaattgggcc 10334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 33057798 - 33057653
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||          ||||| |||||| | |||||||||||   ||||    
T  33057798 aaaaaaaaattgcaacacatttatagg-atttacataagaaattgcaagcaaataataaaaaaa---tctaaagaaattgttcaatttataggggattat 33057703  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||| | | ||||||||||||||||| |||||| ||||||||    
T  33057702 ataagaaattcatagggatttacataagaaattgaaaaaaaattgggccg 33057653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 19334638 - 19334554
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaa 251  Q
    ||||| |||||| |||||||||||||  ||||||||| ||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  19334638 tctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataagaaattgcaaaaaaattgggccgaa 19334554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 17303257 - 17303113
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||||||||||||   |||||||||||||| |||||||||||||          ||||| ||||||  |||||||| | |  |||||    
T  17303257 aaaaaaaaattgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaa--tctaaagaaattgcccaatttacaagggtttat 17303160  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    |||| ||||||| | ||||||||||||||||||| |||||| |||||    
T  17303159 ataagaaattcataggaatttacataagaaattgcaaaaaaattggg 17303113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 15017823 - 15017896
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| |||||| ||||||||||| |  ||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  15017823 tctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 29556011 - 29555939
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||||  ||||||||| ||||||| | ||||||||| |||||||||| ||||| ||||    
T  29556011 gaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattgtcaaaaaattgg 29555939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 43342488 - 43342533
Alignment:
Q  195 tttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  43342488 tttatataagaaattcagaggaatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 10576737 - 10576801
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  10576737 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 10576801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 24320503 - 24320439
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||  | ||||||||| ||||||||| |||||||||||    
T  24320503 ccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattgcaaaaaatttgg 24320439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 32876602 - 32876530
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| |||||||||||||  ||||||||| ||||||| | | || |||| ||||||||| |||||||||||    
T  32876602 gaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttgg 32876530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 34707180 - 34707244
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  34707180 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 34707244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 44164807 - 44164743
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| |  |||||||| ||||||||| |||||||||||    
T  44164807 ccaatttataggggtttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttgg 44164743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 26284546 - 26284463
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaa-ttgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||||   |||||| ||||||| ||||| |||||||    
T  26284546 gccaggattgttataaagtttgggcaaaaaaaaaaattgcaacacatttataggggtttacaaaagaaattgcaagaaaataat 26284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 9770709 - 9770782
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| |||||| ||||||| ||||   ||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  9770709 tctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaaa 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 29981185 - 29981120
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaa 238  Q
    |||||| |||||||||||| | ||||||||| ||||||| | | ||||||| ||||||||| ||||    
T  29981185 gaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattgcaaaa 29981120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 34259582 - 34259646
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||| ||||    
T  34259582 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaaattgg 34259646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 41853119 - 41853175
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||| |||||||||||||||||||||  |||| |||  |||| |||||||||||||    
T  41853119 aaaaaaaaattgcaacacatttatagaggtttatatagaaaattgcaagcaaataat 41853175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 17888684 - 17888546
Alignment:
Q  108 attgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaa 207  Q
    ||||||||||||||||||   |||||||||||||| |||||||||||||          ||||| ||||||  ||||||||||||   |||||||| |||    
T  17888684 attgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaa---tctaaagaaattgcccaatttatagggggttatataagaaa 17888588  T
Q  208 ttcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| | ||||||||||||||||||| |||||||||||||||    
T  17888587 ttcataggaatttacataagaaattgaaaaaaatttgggccg 17888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 47084062 - 47084144
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||||| ||||||| ||||||||||||  ||||||||| |||||||||  |||||||||||||||||| ||||||||| |||||    
T  47084062 tctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccg 47084144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 12792375 - 12792218
Alignment:
Q  98 caaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaattt 197  Q
    ||||||| || ||||||||||||||||||| |||| |||||||||  ||||||||||||          ||||| | ||||  ||||||||||||  |||    
T  12792375 caaaaaaaaatttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaa---tctaaagtaattgcccaatttataggggttt 12792279  T
Q  198 atataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    |||||| |||||||||  |||||||||||||||||  |||||| ||||||| || ||||||    
T  12792278 atataagaaattcagagaaatttacataagaaattacaaaaaaattgggccaaagcccgga 12792218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 46473989 - 46474126
Alignment:
Q  109 ttgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaat 208  Q
    ||||||||||||||||   |||||||||||||||  ||||||||||||          ||||| |||||| | ||||||||| |  ||||||||| ||||    
T  46473989 ttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaa---tctaaagaaattgtacaatttatatgggtttatataaaaaat 46474085  T
Q  209 tcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||| | ||||||||||||||||||| |||||||||||||||    
T  46474086 tcacaggaatttacataagaaattgcaaaaaatttgggccg 46474126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 10094464 - 10094389
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||| ||||||||||||  ||||||||| |||||||||  |||||||||||||||||  |||||||||||||||    
T  10094464 aaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatttgggccg 10094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 9742611 - 9742538
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| ||||||  ||||||||||||  || |||||| ||||||||| ||||||||||||||||||||||||||    
T  9742611 tctaaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacataagaaattgtaaaaaa 9742538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 11054434 - 11054581
Alignment:
Q  95 ggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaa 194  Q
    |||||||||| || |||||||||||||||| |  |||||||||||||| ||||||||||||          | |||| || |||  |||||||||||       
T  11054434 ggacaaaaaaaaagttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagagg 11054533  T
Q  195 tttatataataaattcagaagaatttacataagaaattgtaaaaaatt 242  Q
    ||||||||| ||||||| | | ||||||||||||||||| ||||||||    
T  11054534 tttatataagaaattcatagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 25954814 - 25954878
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||| ||||||||| ||||||| | ||||||||| ||||||||| |||||||||||    
T  25954814 ccaatttataggagtttatataagaaattcataggaatttacacaagaaattgcaaaaaatttgg 25954878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 322716 - 322635
Alignment:
Q  75 gccaggattgtta-aaagtatggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||||| ||| ||||| ||| ||||||| ||||||||||||||||| || | |||||||||||||| |||||||||||||    
T  322716 gccaggattattacaaagtctgggcaaaaaa-aaattgcaacacatttacaggtgtttacataagaaattgcaagcaaataat 322635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 31377376 - 31377521
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| ||||||||||||||||||||   |||||||||||||| ||||||||||| |          ||||| ||||||  |||||||||||    ||||    
T  31377376 aaaaaaaaattgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaa---tctaaagaaattgcccaatttatagagggttat 31377472  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||| ||||||| | | ||||||||||||||||| |||||||||||||||    
T  31377473 ataagaaattcatagggatttacataagaaattg-aaaaaatttgggccg 31377521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 20818631 - 20818696
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    ||||||||||||| ||||||||| ||||||| | | ||||||| ||||||||| ||||||||||||    
T  20818631 ccaatttataggagtttatataagaaattcatagggatttacaaaagaaattgcaaaaaatttggg 20818696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 16338285 - 16338213
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| ||||||||||||| |||||||||| ||||||| | ||||||||| || |||||| |||||| ||||    
T  16338285 gaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattgg 16338213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 54090244 - 54090307
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttg 244  Q
    |||||||||| || ||||||||||||||||||| | ||||||| ||| ||||| ||||||||||    
T  54090244 ccaatttataagagtttatataataaattcagagggatttacaaaaggaattgcaaaaaatttg 54090307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 19124788 - 19124734
Alignment:
Q  195 tttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||| || |||||    
T  19124788 tttatataagaaattcagaggaatttacataagaaattgcaaaaaaattaggccg 19124734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 37801328 - 37801266
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaattt 243  Q
    |||||||||||| |||||||||| ||||||| |  |||||||| ||||||||| |||||||||    
T  37801328 ccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgcaaaaaattt 37801266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 49284421 - 49284498
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| ||||||||||| ||| | ||||||    
T  49284421 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgga 49284498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 1535835 - 1535899
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  1535835 ccaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 1535899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 35018919 - 35019063
Alignment:
Q  95 ggacaaaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaa 194  Q
    |||||||||| || |||||||||||||||| |  | |||||||||||| |||||||||||||          | ||| ||||||| | |||||||| |      
T  35018919 ggacaaaaaaaaatttgcaacacatttata-aggtgtacataagaaattgcaagcaaataataaaaaa----tgtaaagaaattacctaatttataaggg 35019013  T
Q  195 tttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||| |||||||  || ||||||| |||||||||||||||||||||    
T  35019014 tttatataagaaattca-taggatttacacaagaaattgtaaaaaatttgg 35019063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 36012249 - 36012174
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccg 256  Q
    ||||||||||||  ||||||||| ||||||| | | ||||||| || |||||| ||||||||||| ||||| ||||    
T  36012249 ccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccgaagcccg 36012174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 36851446 - 36851387
Alignment:
Q  186 ttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||||  ||||||||||||||||| | | ||||||| ||||||||| |||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttacacaagaaattgcaaaaaatttgg 36851387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 50328852 - 50328919
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    |||||| ||||||||||||   ||||||||| ||||| ||| ||||||||| ||||||||| ||||||    
T  50328852 gaaattgtccaatttatagaggtttatataagaaattaagaggaatttacaaaagaaattgcaaaaaa 50328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 9742508 - 9742480
Alignment:
Q  259 ggggtcgccgggcggtgaaaccaccactg 287  Q
    |||||||||||||||||||||||||||||    
T  9742508 ggggtcgccgggcggtgaaaccaccactg 9742480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 34241057 - 34241121
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||  ||||||||| ||||||| | | || |||| ||||||||| |||||||||||    
T  34241057 ccaatttataggggtttatataagaaattcatagggatctacacaagaaattgcaaaaaatttgg 34241121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 28750792 - 28750650
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttat 199  Q
    ||||| |||||||||||||||||||    ||||||||||||||  ||||||||||||            ||| ||||||  ||||||||||||  |||||    
T  28750792 aaaaaaaaattgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaat---taaagaaattgcccaatttataggggtttat 28750696  T
Q  200 ataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||    
T  28750695 ataagaaattcagaagaatttacataagaaattgcaaaaaaattgg 28750650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 27863695 - 27863829
Alignment:
Q  109 ttgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaat 208  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||||          ||||| |||||| ||||||||||| |  ||||||||| ||||    
T  27863695 ttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaa----tctaaagaaattgtccaatttataagggtttatataagaaat 27863790  T
Q  209 tcagaagaatttacataag-aaattgtaaaaaatttggg 246  Q
    |||||  |||||||||||| |||||| ||||| ||||||    
T  27863791 tcagagaaatttacataagaaaattgcaaaaagtttggg 27863829  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 11279533 - 11279583
Alignment:
Q  106 aaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  11279533 aaattgcaacacatttatagagatttacataagaaattgcaagcaaataat 11279583  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 24497647 - 24497570
Alignment:
Q  172 tgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccg 249  Q
    |||||||  ||||||||||||  ||||||||| ||||||||| ||||||||| || |||||| |||||||||||||||    
T  24497647 tgaaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccg 24497570  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 14309862 - 14309792
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaa 251  Q
    |||||||||||| |||||||||| ||||||| | | ||||||| ||||||||| ||||||||||| |||||    
T  14309862 ccaatttatagggatttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaa 14309792  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 34088774 - 34088831
Alignment:
Q  201 taataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  34088774 taataaatttagaagaatttacataagaaattacaaaaaatttgggccggagcccgga 34088831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 24694715 - 24694651
Alignment:
Q  181 ccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    ||||||||||||| ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  24694715 ccaatttataggagtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 24694651  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 13103246 - 13103119
Alignment:
Q  114 acacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttatataataaattcaga 213  Q
    |||||||||||| | ||||||| |||||| |||||||||||||          ||||| ||||||  ||||||||||    ||||||||| |||||||||    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaa---tctaaagaaattgcccaatttataaaggtttatataagaaattcaga 13103150  T
Q  214 agaatttacataagaaattgtaaaaaatttg 244  Q
     |||||||||||| |||||| ||||||||||    
T  13103149 ggaatttacataaaaaattgcaaaaaatttg 13103119  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 11212658 - 11212714
Alignment:
Q  100 aaaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataat 156  Q
    ||||| |||| |||||||||||||||  |||||||||||||||  ||||||||||||    
T  11212658 aaaaaaaaatcgcaacacatttataggaatttacataagaaattacaagcaaataat 11212714  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 13627605 - 13627681
Alignment:
Q  182 caatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgggccgaaccccgga 258  Q
    |||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| ||||||||||| ||| | ||||||    
T  13627605 caatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgga 13627681  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 232
Target Start/End: Original strand, 34103673 - 34103800
Alignment:
Q  101 aaaacaaattgcaacacatttatagatatttacataagaaatagcaagcaaataatnnnnnnnnnttctaatgaaattatccaatttataggaatttata 200  Q
    |||| ||||||||||||||||| | |  |||||||||||||| |||| ||||||||          ||||| ||||||  |||||||||| |  ||||||    
T  34103673 aaaataaattgcaacacatttacaaaggtttacataagaaattgcaaacaaataataaaaaa----tctaaagaaatttcccaatttatacgggtttata 34103768  T
Q  201 taataaattcagaagaatttacataagaaatt 232  Q
    ||| ||||||||| |||||||||||| |||||    
T  34103769 taagaaattcagaggaatttacataataaatt 34103800  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 1727996 - 1727933
Alignment:
Q  182 caatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||||||||  ||||||||| ||||||| | | ||||||| ||||||||| |||||||||||    
T  1727996 caatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgg 1727933  T

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Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 20902 - 20836
Alignment:
Q  174 aaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| ||||||||||||   ||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  20902 aaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaa 20836  T

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Target: scaffold0079 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 54575 - 54647
Alignment:
Q  173 gaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaatttgg 245  Q
    |||||| ||||||||||||| |||||||||| ||||||| | ||||||||| || |||||| |||||| ||||    
T  54575 gaaattgtccaatttatagggatttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattgg 54647  T

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Target: scaffold0620 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2225 - 2270
Alignment:
Q  201 taataaattcagaagaatttacataagaaattgtaaaaaatttggg 246  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  2225 taataaatttagaagaatttacataagaaattacaaaaaatttggg 2270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 34530 - 34457
Alignment:
Q  167 tctaatgaaattatccaatttataggaatttatataataaattcagaagaatttacataagaaattgtaaaaaa 240  Q
    ||||| |||| | ||||||||||||  ||||||||||  |||||||| | ||||||||||||||||| ||||||    
T  34530 tctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaattgcaaaaaa 34457  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 85506 - 85550
Alignment:
Q  109 ttgcaacacatttatagatatttacataagaaatagcaagcaaat 153  Q
    |||||||| |||||||||  |||||||||||||| ||||||||||    
T  85506 ttgcaacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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