View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_high_21 (Length: 407)

Name: NF11482_high_21
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_high_21
NF11482_high_21
[»] chr6 (2 HSPs)
chr6 (5-405)||(29839927-29840327)
chr6 (220-405)||(29831357-29831542)
[»] chr1 (4 HSPs)
chr1 (231-397)||(34624847-34625013)
chr1 (137-212)||(49756692-49756767)
chr1 (126-229)||(21623594-21623696)
chr1 (133-228)||(25629796-25629891)
[»] chr7 (2 HSPs)
chr7 (126-209)||(8087005-8087088)
chr7 (264-328)||(5306465-5306529)
[»] chr4 (2 HSPs)
chr4 (126-212)||(17038381-17038467)
chr4 (128-209)||(25396012-25396093)
[»] scaffold0004 (1 HSPs)
scaffold0004 (130-212)||(234356-234438)
[»] chr5 (1 HSPs)
chr5 (157-230)||(33239345-33239418)
[»] chr3 (1 HSPs)
chr3 (126-231)||(44873891-44873998)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Original strand, 29839927 - 29840327
Alignment:
Q  5 catagtactactctctctgttcctttttagtcgttgttttaaagatattaatcataccaagaaaacttattaaattttattacttttgatagaacggttt 104  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29839927 catagtactactctctctgttccattttagtcgctgttttaaagatattaatcataccaagaaaacttattaaattttattacttttgatagaacggttt 29840026  T
Q  105 gtattttttctataacattagccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29840027 gtattttttctataacattagccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatat 29840126  T
Q  205 ttaatgttacgatgaactttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatggga 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29840127 ttaatgttacgatgaactttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatggga 29840226  T
Q  305 tggctgtagctgctttgcaagcagcagatgaatatttcaaagaaagcaaaaagttgtgtgaggcattcaacactgctcctccattgtcaaggttatctat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29840227 tggctgtagctgctttgcaagcagcagatgaatatttcaaagaaagcaaaaagttgtgtgaggcattcaacactgctcctccattgtcaaggttatctat 29840326  T
Q  405 t 405  Q
    |    
T  29840327 t 29840327  T

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Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 220 - 405
Target Start/End: Complemental strand, 29831542 - 29831357
Alignment:
Q  220 actttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatgggatggctgtagctgctt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29831542 actttaaaaacgatttaccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatgggatggctgtagctgctt 29831443  T
Q  320 tgcaagcagcagatgaatatttcaaagaaagcaaaaagttgtgtgaggcattcaacactgctcctccattgtcaaggttatctatt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29831442 tgcaagcagcagatgaatatttcaaagaaagcaaaaagttgtgtgaggcattcaacactgctcctccattgtcaaggttatctatt 29831357  T

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Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 231 - 397
Target Start/End: Complemental strand, 34625013 - 34624847
Alignment:
Q  231 gatttaccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatgggatggctgtagctgctttgcaagcagca 330  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||     
T  34625013 gatttatcaggctacggcatattattatcatggtttgattcttgatgagggcaatacagagaaatctcatgggatggctgtagctgcgctgcaagcagcg 34624914  T
Q  331 gatgaatatttcaaagaaagcaaaaagttgtgtgaggcattcaacactgctcctccattgtcaaggt 397  Q
    ||||| |||||||||||||| || ||| | ||||||||||||||  | ||  |||||||||||||||    
T  34624913 gatgagtatttcaaagaaagtaagaagctctgtgaggcattcaatgcagcaactccattgtcaaggt 34624847  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 49756767 - 49756692
Alignment:
Q  137 tattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 212  Q
    |||||||||||| ||| || |||||||| |||||||| ||||| ||||||| ||||||||||||||| ||| ||||    
T  49756767 tattatctcattacacatatttctatctctgcaataaatacttaagggtataattgacaaaacaataattattgtt 49756692  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 21623696 - 21623594
Alignment:
Q  126 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaacttta 225  Q
    |||||| |||||||||||| ||| ||| || |||| |||||||||||| ||||| ||  ||||||| ||||||||||| | |||||| || | ||||||     
T  21623696 ccttaaatatttattatctaatttcacttatttctctctttgcaataaatactt-agactattattaacaaaacaatagtcaatgtttcgctaaactttg 21623598  T
Q  226 aaaa 229  Q
    ||||    
T  21623597 aaaa 21623594  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 25629796 - 25629891
Alignment:
Q  133 tatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaa 228  Q
    |||||||||||| |||| || || |||| | |||||||||| || || ||||| ||||| ||| ||||||| |||||||||  || ||||||||||    
T  25629796 tatttattatcttattcaacttatttctctatttgcaataaatagttaagggtgttattcacacaacaataattaatgttataatcaactttaaaa 25629891  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 8087088 - 8087005
Alignment:
Q  126 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaat 209  Q
    |||| ||||||||||| ||||||||| ||| |||| |||||||||||| || || ||| |||||||||||||||| || |||||    
T  8087088 ccttgactatttattaactcattccatctatttctctctttgcaataaatagttaaggatattattgacaaaacattagttaat 8087005  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 5306529 - 5306465
Alignment:
Q  264 tttgattcttgatgagggaaatacagagaaatctcatgggatggctgtagctgctttgcaagcag 328  Q
    |||||||||||| || ||||||| | | |||||||||||||||| |||||||||| | |||||||    
T  5306529 tttgattcttgaagacggaaataaataaaaatctcatgggatggttgtagctgctctacaagcag 5306465  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 17038467 - 17038381
Alignment:
Q  126 ccttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 212  Q
    |||| ||||| |||||||||||| |||||| |||| | |||||||||| ||||| | ||||||||||| || |||||| ||||||||    
T  17038467 ccttgactatatattatctcattgcacctatttctctttttgcaataaatacttaatggtattattgataagacaataattaatgtt 17038381  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 25396012 - 25396093
Alignment:
Q  128 ttaactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaat 209  Q
    ||||||| |||||||||||||| |||||  | | ||| ||| |||| |||||||| ||||||| |||||||||||| |||||    
T  25396012 ttaactacttattatctcattctacctatctatctctctgcgataaatacttgagagtattatcgacaaaacaatagttaat 25396093  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 234438 - 234356
Alignment:
Q  130 aactatttattatctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgtt 212  Q
    |||||||||| |||| |||||| ||| | || |||||| ||||| || || || ||||||||||||||||| || ||||||||    
T  234438 aactatttataatctaattccatctattcctctctttgtaataaatatttaagagtattattgacaaaacagtaattaatgtt 234356  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 33239418 - 33239345
Alignment:
Q  157 ttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactttaaaaac 230  Q
    |||| |||||||||||| ||||| | ||| ||||||||||||||| | |||||||| |  |||||||| |||||    
T  33239418 ttctctctttgcaataaatacttaaaggtgttattgacaaaacaaaaattaatgttgcattgaactttgaaaac 33239345  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 44873891 - 44873998
Alignment:
Q  126 ccttaactatttatta--tctcattccacctacttctatctttgcaataactacttgagggtattattgacaaaacaatatttaatgttacgatgaactt 223  Q
    ||||||||||||||||  |||||||| ||||| |||| ||| |||| ||| || || ||||| |||||||  |||||||| |||||||  |  ||| |||    
T  44873891 ccttaactatttattacatctcattctacctatttctctctctgcagtaaataattaagggtgttattgattaaacaatagttaatgtcccattgacctt 44873990  T
Q  224 taaaaacg 231  Q
    ||||||||    
T  44873991 taaaaacg 44873998  T

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